Jatropha Genome Database
- JcPR03ASM3X.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcPR03ASM3X.10 + phase: 1 /partial
(95 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01001466001 assembled CDS 121 8e-29
GSVIVT01033238001 assembled CDS 105 3e-24
GSVIVT01009350001 assembled CDS 91 7e-20
GSVIVT01016158001 assembled CDS 59 6e-10
GSVIVT01018061001 assembled CDS 55 8e-09
GSVIVT01000123001 assembled CDS 52 7e-08
GSVIVT01018058001 assembled CDS 50 2e-07
GSVIVT01018059001 assembled CDS 47 1e-06
GSVIVT01018065001 assembled CDS 47 1e-06
GSVIVT01029283001 assembled CDS 47 2e-06
GSVIVT01003129001 assembled CDS 46 4e-06
>GSVIVT01001466001 assembled CDS
Length = 969
Score = 121 bits (303), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 72/92 (78%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LNGVATIIGKIGLAFA++TFLVLMGRFL+ KA ++ I WS SDA+T+LN+F
Sbjct: 346 LNGVATIIGKIGLAFAVLTFLVLMGRFLLQKALHSNITDWSFSDAVTILNYFAIAVTIIV 405
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTLSLAFAMK+LM +ALVR +
Sbjct: 406 VAVPEGLPLAVTLSLAFAMKKLMNAKALVRHL 437
>GSVIVT01033238001 assembled CDS
Length = 1033
Score = 105 bits (263), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/92 (65%), Positives = 72/92 (78%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LNGVATIIGKIGLAFA++TF+VL+ RFL+ KA E WS+SDALT+LN+F
Sbjct: 346 LNGVATIIGKIGLAFAVLTFVVLVVRFLVEKALRKEFTDWSSSDALTLLNYFAIAVTIIV 405
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTLSLAFAMK+LMK++ALVR +
Sbjct: 406 VAVPEGLPLAVTLSLAFAMKKLMKEKALVRHL 437
>GSVIVT01009350001 assembled CDS
Length = 419
Score = 91.3 bits (225), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 56/88 (63%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LNGVATIIGK+GL FA +TF VL+ K R WS DAL +L FF
Sbjct: 326 LNGVATIIGKLGLFFAAVTFAVLVQGLFSRKLREGSHWSWSGDDALEMLEFFAVAVTIVV 385
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRAL 88
PEGLPLAVTLSLAFAMK++M D+AL
Sbjct: 386 VAVPEGLPLAVTLSLAFAMKKMMHDKAL 413
>GSVIVT01016158001 assembled CDS
Length = 1152
Score = 58.5 bits (140), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKW------SASDALT-VLNFFX 53
LNGVAT IG +GLA A+ VL+ R+ R+++ S DA+ V+
Sbjct: 445 LNGVATFIGIVGLAVAVSVLAVLLIRYFTGHTRDSDGTVQFKSGVTSFGDAVDDVIKIIT 504
Query: 54 XXXXXXXXXXPEGLPLAVTLSLAFAMKQLMKDRAL 88
PEGLPLAVTL+LA++M+++M D+AL
Sbjct: 505 IAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKAL 539
>GSVIVT01018061001 assembled CDS
Length = 3100
Score = 54.7 bits (130), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LN + + IGK+GLA A + VL+ R+ + V+
Sbjct: 1251 LNKLTSSIGKVGLAVAFLVLTVLLVRYF--------------TGMNAVVRIIAAAVTIVV 1296
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 1297 VAIPEGLPLAVTLTLAYSMKRMMADQAMVRRL 1328
Score = 48.5 bits (114), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 20/92 (21%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LN + + IGK+GLA A +T + ++I+ ++
Sbjct: 511 LNKLTSSIGKVGLAIAFLT-------------KADDIVN-------AMVRIIAAAVTIVV 550
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 551 VAIPEGLPLAVTLTLAYSMKKMMADQAMVRKL 582
>GSVIVT01000123001 assembled CDS
Length = 732
Score = 51.6 bits (122), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFF 52
LNGVAT IGKIGL FA++TF VL+ K WS DAL +L FF
Sbjct: 273 LNGVATFIGKIGLVFAVVTFAVLVQGLFNRKLGEGTHWSWSGDDALEMLEFF 324
>GSVIVT01018058001 assembled CDS
Length = 1732
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 17/92 (18%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LN + + IGK+GL A FLVL+ ++++++ V+
Sbjct: 1279 LNELTSSIGKVGLTVA---FLVLV-------TKSDDVVN-------AVVGIIASAVSILV 1321
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 1322 MSIPEGLPLAVTLTLAYSMKRMMADQAMVRKL 1353
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LN + + IGK+GLAF +K + ++I+ V+
Sbjct: 361 LNKLTSSIGKVGLAFN------------GSKTKADDIVN-------AVVGIIAAAVTIVV 401
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 402 VAIPEGLPLAVTLTLAYSMKRMMADQAMVRKL 433
>GSVIVT01018059001 assembled CDS
Length = 782
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 20/92 (21%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LN + + IGK GLA A FLVL G + N ++ A+ A+T++
Sbjct: 231 LNKLTSSIGKFGLAAA---FLVLAGDIV------NAVVGIIAA-AITIV----------V 270
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+L ++MK++M D+ +VR +
Sbjct: 271 VAIPEGLPLAVTLTLGYSMKRMMADQVMVRKL 302
>GSVIVT01018065001 assembled CDS
Length = 4083
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 18/92 (19%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKWSASDALTVLNFFXXXXXXXX 60
LN + + IGK+GLA F +K + ++I+ ++
Sbjct: 2741 LNKLTSSIGKVGLA-----------EFNGSKTKADDIVN-------AMVRIIAAAVTIVV 2782
Query: 61 XXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 2783 VAIPEGLPLAVTLTLAYSMKRMMADQAMVRKL 2814
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 27/29 (93%)
Query: 64 PEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 350 PEGLPLAVTLTLAYSMKRMMADQAMVRKL 378
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 27/29 (93%)
Query: 64 PEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D+A+VR +
Sbjct: 1115 PEGLPLAVTLTLAYSMKRMMADQAMVRKL 1143
>GSVIVT01029283001 assembled CDS
Length = 1080
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 1 LNGVATIIGKIGLAFAIMTFLVLMGRFLMTKARNNEIMKW------SASDALT-VLNFFX 53
LNGVAT IG +GL A++ +VL+ R+ +N++ K DA+ +
Sbjct: 374 LNGVATFIGIVGLLVALVVLVVLLARYFTGHTKNSDGSKQFIPGRTGVGDAVDGAIKIVT 433
Query: 54 XXXXXXXXXXPEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++M+++M D+ALVR +
Sbjct: 434 VAVTIVVVAVPEGLPLAVTLTLAYSMRKMMVDKALVRRL 472
>GSVIVT01003129001 assembled CDS
Length = 862
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 64 PEGLPLAVTLSLAFAMKQLMKDRALVRSI 92
PEGLPLAVTL+LA++MK++M D A+VR +
Sbjct: 412 PEGLPLAVTLTLAYSMKRMMADHAMVRKL 440