Jatropha Genome Database

JcPR03AS3LV.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AS3LV.10 + phase: 1 /pseudo/partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020224001 assembled CDS                                        86   4e-18
GSVIVT01007784001 assembled CDS                                        85   6e-18
GSVIVT01032500001 assembled CDS                                        82   7e-17
GSVIVT01000602001 assembled CDS                                        80   2e-16
GSVIVT01020227001 assembled CDS                                        79   4e-16

>GSVIVT01020224001 assembled CDS
          Length = 538

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 12  NVRKFCRDLGEVIHRANSTRYGLAAGVFTQNIDTANILTRALRVGTVWIN*L*CVRRCDS 71
           ++ KF +DLGEVI RAN+T YGLAAGVFTQN+DTAN LTRAL+VGTVWIN          
Sbjct: 443 SILKF-KDLGEVIRRANATSYGLAAGVFTQNLDTANTLTRALKVGTVWINCFDVFDAAIP 501

Query: 72  FWWI*DEWTWKREGYYSLANYL 93
           F         + +G YSL NYL
Sbjct: 502 FGGYKMSGHGREKGIYSLQNYL 523


>GSVIVT01007784001 assembled CDS
          Length = 538

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 51/76 (67%)

Query: 18  RDLGEVIHRANSTRYGLAAGVFTQNIDTANILTRALRVGTVWIN*L*CVRRCDSFWWI*D 77
           +DL EVI RANSTRYGLAAGVFT+NI+TAN LTRALRVGTVW+N          F     
Sbjct: 448 KDLDEVIRRANSTRYGLAAGVFTKNINTANTLTRALRVGTVWVNCFDVFDAAIPFGGYKM 507

Query: 78  EWTWKREGYYSLANYL 93
               + +G YSL NYL
Sbjct: 508 SGVGREKGIYSLNNYL 523


>GSVIVT01032500001 assembled CDS
          Length = 535

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 12  NVRKFCRDLGEVIHRANSTRYGLAAGVFTQNIDTANILTRALRVGTVWIN*L*CVRRCDS 71
           ++ KF +DL EVI RAN+T YGLAAG+FTQN+DTAN LTRALRVGTVWIN          
Sbjct: 440 SILKF-KDLDEVIRRANATHYGLAAGIFTQNLDTANTLTRALRVGTVWINCFFVFDAAIP 498

Query: 72  FWWI*DEWTWKREGYYSLANYL 93
           F         + +G Y L+NY+
Sbjct: 499 FGGRKMSGHGREKGIYGLSNYM 520


>GSVIVT01000602001 assembled CDS
          Length = 388

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 12  NVRKFCRDLGEVIHRANSTRYGLAAGVFTQNIDTANILTRALRVGTVWIN*L*CVRRCDS 71
           ++ KF +DL EVI RAN+  YGLAAGVFTQN+DT N LTRALRVGTVW+N          
Sbjct: 293 SILKF-KDLDEVIRRANAASYGLAAGVFTQNLDTTNTLTRALRVGTVWVNCFDVFDAAIP 351

Query: 72  FWWI*DEWTWKREGYYSLANYL 93
           F         + +G YSL NYL
Sbjct: 352 FGGYTMSGHGREKGMYSLQNYL 373


>GSVIVT01020227001 assembled CDS
          Length = 571

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 12  NVRKFCRDLGEVIHRANSTRYGLAAGVFTQNIDTANILTRALRVGTVWIN*L*CVRRCDS 71
           ++ KF +DL EVI RAN++  GLAAGVFTQNIDTAN LTRALRVGTVWIN          
Sbjct: 476 SILKF-KDLDEVIRRANASNCGLAAGVFTQNIDTANTLTRALRVGTVWINCFDVFDAAIP 534

Query: 72  FWWI*DEWTWKREGYYSLANYL 93
           F         + +G Y L NYL
Sbjct: 535 FGGYKMSGNGREKGIYCLQNYL 556