Jatropha Genome Database

JcPR03AM69T.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AM69T.10 + phase: 2 /pseudo/partial
         (61 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009165001 assembled CDS                                        53   3e-08
GSVIVT01015633001 assembled CDS                                        48   9e-07

>GSVIVT01009165001 assembled CDS
          Length = 328

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 7/48 (14%)

Query: 1   FIEKWVATADIAKLRTEADASGLSFDQQCKYCEK-------VCLHTYP 41
           F+E WVA   +AKLRT+A A  L F QQCKYCEK       + L TYP
Sbjct: 228 FVENWVANGKVAKLRTKAAAGHLGFYQQCKYCEKESINHSLLNLLTYP 275


>GSVIVT01015633001 assembled CDS
          Length = 301

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 1   FIEKWVATADIAKLRTEADASGLSFDQQCKYCEK-------VCLHTYP 41
           FI+ WV     AKLR +A AS LSFDQQC+ CEK       + L TYP
Sbjct: 207 FIQSWVVVGKNAKLRAKATASKLSFDQQCRNCEKESINCSLLNLLTYP 254