Jatropha Genome Database

JcPR03AHRQV.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AHRQV.10 - phase: 0 /partial
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019880001 assembled CDS                                        89   5e-19
GSVIVT01012897001 assembled CDS                                        74   2e-14

>GSVIVT01019880001 assembled CDS
          Length = 291

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 27 QTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
          Q RQLK +I THPLYEQLLAAHV+CLRVATPIDQLPLIDAQL+QSHH
Sbjct: 23 QQRQLKGEIVTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLTQSHH 69


>GSVIVT01012897001 assembled CDS
          Length = 413

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 39/45 (86%)

Query: 27  QTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQS 71
           +  + KADI  HPLYEQLL+AHVSCLR+ATP+DQLP IDAQL+QS
Sbjct: 139 ENARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQS 183