Jatropha Genome Database

JcPR02IGLIS.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02IGLIS.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003133001 assembled CDS                                       100   2e-22

>GSVIVT01003133001 assembled CDS
          Length = 700

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 69/88 (78%), Gaps = 2/88 (2%)

Query: 35  PKKV-YRSPRFRGDSRSPSRKSGELSQGRSQRSPPDNLVHKAPETSNSNHGRELSRSRSP 93
           PKK+   SPR++ DSRSP+RKSG+ +QG S RSP  +   KA E   SNHGR LSRS SP
Sbjct: 446 PKKISTMSPRYQHDSRSPARKSGKRNQGNS-RSPLGSPARKATEPPASNHGRGLSRSPSP 504

Query: 94  NGTPQRVRKGRGFTERYSFARRYRTPSP 121
           NG P+R+RKGRGFT+R+SFARRYRTPSP
Sbjct: 505 NGAPKRIRKGRGFTDRFSFARRYRTPSP 532