Jatropha Genome Database

JcPR02GZLT5.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02GZLT5.10 + phase: 0 /pseudo/partial
         (74 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017810001 assembled CDS                                        81   9e-17
GSVIVT01010999001 assembled CDS                                        78   9e-16
GSVIVT01018940001 assembled CDS                                        61   9e-11
GSVIVT01014191001 assembled CDS                                        56   4e-09
GSVIVT01029701001 assembled CDS                                        50   3e-07

>GSVIVT01017810001 assembled CDS
          Length = 350

 Score = 81.3 bits (199), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 43/45 (95%)

Query: 30  KFLKSRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           K +++RSTR+V +KQVSPRVPAG+YPVAH+SYE+NVLGSRGPRRM
Sbjct: 155 KIMRNRSTRLVGLKQVSPRVPAGSYPVAHISYEVNVLGSRGPRRM 199


>GSVIVT01010999001 assembled CDS
          Length = 228

 Score = 77.8 bits (190), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 33  KSRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           KSRSTR +  +QVSPRVPAGNYPVAH+SYELNVLGSRGPRRM
Sbjct: 158 KSRSTRRLGSRQVSPRVPAGNYPVAHISYELNVLGSRGPRRM 199


>GSVIVT01018940001 assembled CDS
          Length = 342

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 34  SRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           SRS+R  + KQVSPRVPA NY VA +SYELNVL +RGPRRM
Sbjct: 215 SRSSRRFHSKQVSPRVPACNYSVATISYELNVLRTRGPRRM 255


>GSVIVT01014191001 assembled CDS
          Length = 325

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 34  SRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           SR+ R    KQ+SP+VPAGN+ V  VSY+ N+L SRGPRRM
Sbjct: 159 SRAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRM 199


>GSVIVT01029701001 assembled CDS
          Length = 310

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 30/37 (81%)

Query: 35  RSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGP 71
           R+++    K+VSP+VP G+Y +AH++YELNVLG+R P
Sbjct: 217 RTSKRFYSKKVSPKVPTGSYNIAHITYELNVLGTRQP 253