Jatropha Genome Database

JcPR02GC7KU.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02GC7KU.10 + phase: 1 /pseudo/partial
         (55 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037533001 assembled CDS                                        66   3e-12
GSVIVT01015567001 assembled CDS                                        65   9e-12
GSVIVT01001269001 assembled CDS                                        64   1e-11
GSVIVT01027648001 assembled CDS                                        61   9e-11
GSVIVT01022586001 assembled CDS                                        60   2e-10
GSVIVT01013778001 assembled CDS                                        57   2e-09
GSVIVT01012246001 assembled CDS                                        54   1e-08

>GSVIVT01037533001 assembled CDS
          Length = 183

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYNRFIKEE  +RIKASNPDI+HREAF  ++K      HI
Sbjct: 106 PEKRQRVPSAYNRFIKEE-IQRIKASNPDITHREAFSTAAKNWAHFPHI 153


>GSVIVT01015567001 assembled CDS
          Length = 185

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYN+FIKEE  +RIKA+NPDISHREAF  ++K      HI
Sbjct: 107 PEKRQRVPSAYNQFIKEE-IQRIKANNPDISHREAFSTAAKNWAHFPHI 154


>GSVIVT01001269001 assembled CDS
          Length = 211

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYNRFIK+E  +RIKA NPDI+HREAF  ++K      HI
Sbjct: 124 PEKRQRVPSAYNRFIKDE-IQRIKAGNPDITHREAFSAAAKNWAHFPHI 171


>GSVIVT01027648001 assembled CDS
          Length = 210

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYNRFIK+E  +RIKA NP ISHREAF  ++K      HI
Sbjct: 123 PEKRQRVPSAYNRFIKDE-IQRIKAGNPGISHREAFSAAAKNWAHFPHI 170


>GSVIVT01022586001 assembled CDS
          Length = 184

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 2   EKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           EK+QRVPSAYNRFIKEE  +RIKA+NPDISH+EAF  ++K      HI
Sbjct: 106 EKKQRVPSAYNRFIKEE-IQRIKANNPDISHKEAFSTAAKNWAHFPHI 152


>GSVIVT01013778001 assembled CDS
          Length = 176

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSK 41
           PEKRQR PSAYNRFIKEE  +R+KA NP ++H+EAF  ++K
Sbjct: 116 PEKRQRAPSAYNRFIKEE-IRRLKAENPKMTHKEAFSTAAK 155


>GSVIVT01012246001 assembled CDS
          Length = 160

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSK 41
           PEK+ R+PSAYNRF+KEE  +RIK +NP+I HREAF  ++K
Sbjct: 100 PEKKHRLPSAYNRFMKEE-IQRIKVANPEIPHREAFSAAAK 139