Jatropha Genome Database

JcPR02FRRM3.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02FRRM3.10 - phase: 1 /pseudo/partial
         (56 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009697001 assembled CDS                                        66   4e-12

>GSVIVT01009697001 assembled CDS
          Length = 568

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/30 (93%), Positives = 30/30 (100%)

Query: 4   VSTNLSLVEKFGIDPNNAFAFWDWVGGRYS 33
           VSTNL+LVE+FGIDPNNAFAFWDWVGGRYS
Sbjct: 247 VSTNLTLVEQFGIDPNNAFAFWDWVGGRYS 276