Jatropha Genome Database

JcPR01E1J32.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01E1J32.10 + phase: 0 
         (57 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029978001 assembled CDS                                       101   7e-23
GSVIVT01027922001 assembled CDS                                        97   2e-21

>GSVIVT01029978001 assembled CDS
          Length = 528

 Score =  101 bits (251), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 47/47 (100%)

Query: 11  QVCVSTTNRNFPGRMGHREGQIYLASPYTAAASALTGYVTDPREFLQ 57
           +VCVSTTNRNFPGRMGH+EGQIYLASPYTAAASALTG+VTDPREFLQ
Sbjct: 482 EVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGFVTDPREFLQ 528


>GSVIVT01027922001 assembled CDS
          Length = 508

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/46 (93%), Positives = 44/46 (95%)

Query: 11  QVCVSTTNRNFPGRMGHREGQIYLASPYTAAASALTGYVTDPREFL 56
           QVCVSTTNRNFPGRMGH+E QIYLASPYTAAASAL GYVTDPREFL
Sbjct: 462 QVCVSTTNRNFPGRMGHKESQIYLASPYTAAASALRGYVTDPREFL 507