Jatropha Genome Database
- JcPR01DAKSA.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcPR01DAKSA.10 + phase: 0 /partial
(67 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01000083001 assembled CDS 110 2e-25
GSVIVT01000084001 assembled CDS 108 6e-25
GSVIVT01017943001 assembled CDS 108 6e-25
GSVIVT01003798001 assembled CDS 69 3e-13
GSVIVT01005215001 assembled CDS 57 2e-09
GSVIVT01032028001 assembled CDS 56 3e-09
GSVIVT01016738001 assembled CDS 55 5e-09
GSVIVT01025342001 assembled CDS 54 2e-08
GSVIVT01032029001 assembled CDS 53 3e-08
GSVIVT01025341001 assembled CDS 52 6e-08
GSVIVT01010359001 assembled CDS 49 5e-07
GSVIVT01025339001 assembled CDS 49 5e-07
GSVIVT01025340001 assembled CDS 49 5e-07
>GSVIVT01000083001 assembled CDS
Length = 738
Score = 110 bits (274), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/64 (81%), Positives = 55/64 (85%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
LK D TLKPLAIELSLPHP GD+FGAV+KV TPAEDGVEGSIW LAKAY V DSG HQL
Sbjct: 458 LKDDGTLKPLAIELSLPHPNGDKFGAVNKVYTPAEDGVEGSIWQLAKAYAAVNDSGYHQL 517
Query: 61 ISHW 64
+SHW
Sbjct: 518 LSHW 521
>GSVIVT01000084001 assembled CDS
Length = 900
Score = 108 bits (270), Expect = 6e-25, Method: Composition-based stats.
Identities = 51/64 (79%), Positives = 55/64 (85%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
LK D TLKPLAIELSLPHP GD+FGAV+KV TPAE+GVEGSIW LAKAY V DSG HQL
Sbjct: 499 LKDDGTLKPLAIELSLPHPSGDKFGAVNKVYTPAENGVEGSIWQLAKAYAAVNDSGYHQL 558
Query: 61 ISHW 64
+SHW
Sbjct: 559 LSHW 562
>GSVIVT01017943001 assembled CDS
Length = 751
Score = 108 bits (269), Expect = 6e-25, Method: Composition-based stats.
Identities = 49/64 (76%), Positives = 54/64 (84%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
LK D TLKPLAIELSLPHP+G+ +GA S+V TPAEDGVEGS+W LAKAY V DSG HQL
Sbjct: 470 LKEDGTLKPLAIELSLPHPQGESYGATSQVYTPAEDGVEGSVWQLAKAYAAVNDSGYHQL 529
Query: 61 ISHW 64
ISHW
Sbjct: 530 ISHW 533
>GSVIVT01003798001 assembled CDS
Length = 619
Score = 69.3 bits (168), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L+ D TLK LAIELSLP D +++V P G E ++WLLAKA+V V DS HQL
Sbjct: 425 LRDDHTLKLLAIELSLPGSSADM--EINRVFLPTTQGTEAALWLLAKAHVAVNDSAYHQL 482
Query: 61 ISHW 64
ISHW
Sbjct: 483 ISHW 486
>GSVIVT01005215001 assembled CDS
Length = 533
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 6 TLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQLISHW 64
TLKP+AIELSLP D + +V TP+ D +W L KA+V D+GVHQLI HW
Sbjct: 180 TLKPIAIELSLP--PTDPNCPLKQVLTPSVDATTSWLWQLGKAHVCSNDAGVHQLIHHW 236
>GSVIVT01032028001 assembled CDS
Length = 4514
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TL+PLAIEL+ P P GD+ +V TP DG +W LAKA+V DSG HQL
Sbjct: 4380 LTMDGTLRPLAIELTRP-PVGDKL-QWKQVFTPGWDGTSCWLWRLAKAHVCAHDSGYHQL 4437
Query: 61 ISHW 64
+ HW
Sbjct: 4438 V-HW 4440
>GSVIVT01016738001 assembled CDS
Length = 927
Score = 55.5 bits (132), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 6 TLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQLISHW 64
TLKP+AIELSLP P +V TP D W LAKA+V D+GVHQL++HW
Sbjct: 520 TLKPIAIELSLP-PSA-PITRAKRVITPPVDATSDWTWKLAKAHVCSNDAGVHQLVNHW 576
>GSVIVT01025342001 assembled CDS
Length = 817
Score = 53.5 bits (127), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TLKPLAIEL+ P EG +V TP + +W LAK + DSG HQL
Sbjct: 410 LTPDGTLKPLAIELTRPPIEGKP--QWKQVFTPTSESTGRWLWRLAKVHFLAHDSGYHQL 467
Query: 61 ISHW 64
+SHW
Sbjct: 468 VSHW 471
>GSVIVT01032029001 assembled CDS
Length = 866
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L + TL+PLAIEL+ P P GD+ +V TP D +W LAK +V DSG HQL
Sbjct: 527 LTMEGTLRPLAIELTRP-PVGDK-PQWKQVFTPGWDATSCWLWRLAKTHVCAHDSGYHQL 584
Query: 61 ISHW 64
+ HW
Sbjct: 585 VVHW 588
>GSVIVT01025341001 assembled CDS
Length = 2408
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TLKPLAIEL+ P +G +KV TP+ + +W AKA+ DSG H+L
Sbjct: 1179 LTPDGTLKPLAIELTRPPMDGKP--QWNKVFTPSSEATGLWLWRFAKAHFLAHDSGYHEL 1236
Query: 61 ISHW 64
+SHW
Sbjct: 1237 VSHW 1240
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TLKPLAIEL+ P EG +V TP + +W AK + DSG HQL
Sbjct: 440 LTPDGTLKPLAIELTRPPIEGKP--QWKQVFTPTSESTGRWLWRFAKVHFLAHDSGYHQL 497
Query: 61 ISHW 64
+SHW
Sbjct: 498 VSHW 501
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TLKPLAIEL+ P +G +V TP + + +W AK + DSG H+L
Sbjct: 2006 LTPDCTLKPLAIELTRPPMDGKP--QWKQVFTPGLEATDHWLWKFAKTHFLAHDSGYHEL 2063
Query: 61 ISHW 64
+SHW
Sbjct: 2064 VSHW 2067
>GSVIVT01010359001 assembled CDS
Length = 920
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 7 LKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQLISHW 64
L+P+AIELSLP P G +V T D IW AKA+V D+GVHQL++HW
Sbjct: 524 LRPIAIELSLP-PTPSSPGK-KRVYTHGHDATTHWIWKQAKAHVCSNDAGVHQLVNHW 579
>GSVIVT01025339001 assembled CDS
Length = 901
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TLKPLAIEL P +G +V TP+ + +W LAK + D+G HQL
Sbjct: 499 LGPDNTLKPLAIELVRPPMDGKP--QWKQVFTPSWEATGSWLWKLAKTHFLAHDAGYHQL 556
Query: 61 ISHW 64
+SHW
Sbjct: 557 VSHW 560
>GSVIVT01025340001 assembled CDS
Length = 872
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 1 LKADETLKPLAIELSLPHPEGDQFGAVSKVCTPAEDGVEGSIWLLAKAYVGVVDSGVHQL 60
L D TLKPLAIEL+ P +G +V TP+ + +W AKA+ DSG H+L
Sbjct: 470 LTPDCTLKPLAIELTRPPMDGKP--QWKQVFTPSLEATGCWLWRFAKAHFLAHDSGYHEL 527
Query: 61 ISHW 64
+SHW
Sbjct: 528 VSHW 531