Jatropha Genome Database

JcPR01D6PKT.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01D6PKT.10 + phase: 2 /partial
         (98 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009430001 assembled CDS                                       144   9e-36
GSVIVT01008150001 assembled CDS                                       106   3e-24

>GSVIVT01009430001 assembled CDS
          Length = 308

 Score =  144 bits (363), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 76/87 (87%)

Query: 1   LCGISCTGEGEAIIRSTLARDVAAVMEYKGLGLQKAVDFVINERLDEGKAGLIAVSSKGE 60
           LCG+SCTGEGEAIIR TL+RDVAAVMEYKGLGLQ+AVDFVI ERLDEG AG+IAVS  GE
Sbjct: 222 LCGVSCTGEGEAIIRGTLSRDVAAVMEYKGLGLQEAVDFVIKERLDEGMAGMIAVSRNGE 281

Query: 61  VACRSNANGMFRGCATEDGFMEVGILE 87
           VA   N  GMFRGCATEDGFMEVGI E
Sbjct: 282 VAYGFNTTGMFRGCATEDGFMEVGIWE 308


>GSVIVT01008150001 assembled CDS
          Length = 322

 Score =  106 bits (264), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 65/85 (76%)

Query: 1   LCGISCTGEGEAIIRSTLARDVAAVMEYKGLGLQKAVDFVINERLDEGKAGLIAVSSKGE 60
           LC +S TG+GEAII  T+ARDVAA+MEYKGL L++A  +VI+E    G AGL+AVS+ GE
Sbjct: 231 LCAVSATGKGEAIICGTVARDVAALMEYKGLSLEEAAAYVISECTPRGTAGLVAVSATGE 290

Query: 61  VACRSNANGMFRGCATEDGFMEVGI 85
           V  + N  GMFR CA+EDG+ E+GI
Sbjct: 291 VTMQFNTTGMFRACASEDGYSEIGI 315