Jatropha Genome Database

JcPR01C6D2I.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01C6D2I.10 + phase: 0 /pseudo/partial
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015824001 assembled CDS                                        88   7e-19
GSVIVT01015821001 assembled CDS                                        85   6e-18

>GSVIVT01015824001 assembled CDS
          Length = 522

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/44 (86%), Positives = 42/44 (95%)

Query: 31  VICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMVSP 74
           VICAFGRLGTMFGCDKY +KPDLVS+AKALSSAY+PIG V+VSP
Sbjct: 314 VICAFGRLGTMFGCDKYGMKPDLVSMAKALSSAYMPIGAVLVSP 357


>GSVIVT01015821001 assembled CDS
          Length = 493

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/44 (81%), Positives = 39/44 (88%)

Query: 31  VICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMVSP 74
           VICAFGRLG MFGCDKY IKPDLVS+AKA SS Y+PIG V+VSP
Sbjct: 283 VICAFGRLGAMFGCDKYGIKPDLVSIAKAFSSGYMPIGAVLVSP 326