Jatropha Genome Database

JcPR01BVAYK.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01BVAYK.10 + phase: 0 /partial
         (64 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030113001 assembled CDS                                        97   1e-21
GSVIVT01014701001 assembled CDS                                        81   8e-17
GSVIVT01007562001 assembled CDS                                        70   2e-13
GSVIVT01003976001 assembled CDS                                        66   4e-12
GSVIVT01004747001 assembled CDS                                        52   6e-08
GSVIVT01007242001 assembled CDS                                        48   9e-07
GSVIVT01020994001 assembled CDS                                        46   3e-06

>GSVIVT01030113001 assembled CDS
          Length = 77

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 56/59 (94%), Gaps = 1/59 (1%)

Query: 1  QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPARDNSSFKPGSNTLGKPQS 59
          QPLPKFG+WDVNDP SA+GFT+IFNKAR+EKKTGGKPDSPA+++S+FK G++ LGKPQS
Sbjct: 6  QPLPKFGDWDVNDPTSADGFTMIFNKARDEKKTGGKPDSPAKEDSAFKHGAD-LGKPQS 63


>GSVIVT01014701001 assembled CDS
          Length = 77

 Score = 81.3 bits (199), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 1  QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPARDNSSFKPG 50
          +PLPKFGEWDVNDPASAEGFTVIFNKAR+EK+TGG+P+SPA   ++ K G
Sbjct: 6  RPLPKFGEWDVNDPASAEGFTVIFNKARDEKRTGGQPESPANVENNVKQG 55


>GSVIVT01007562001 assembled CDS
          Length = 74

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 1  QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT--GGKPDSPARDNSSFKPGSNTLGKPQ 58
          +PLPKFGEWDVN+PASAEGFTVIFNKAR+EKKT   G   SP R+ + +K   +    P+
Sbjct: 8  RPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNAAGNVASPRRNGNGYKQNEDYHYSPK 67


>GSVIVT01003976001 assembled CDS
          Length = 166

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 33/33 (100%)

Query: 1   QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT 33
           +PLPKFGEWDVN+PASAEGFTVIF+KAR+EKKT
Sbjct: 100 RPLPKFGEWDVNNPASAEGFTVIFSKARDEKKT 132


>GSVIVT01004747001 assembled CDS
          Length = 191

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 28/32 (87%)

Query: 3   LPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 34
           +PKFG+WD N+P+SA+G+T IFNK R E++TG
Sbjct: 125 VPKFGDWDENNPSSADGYTHIFNKVREERQTG 156


>GSVIVT01007242001 assembled CDS
          Length = 237

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 3   LPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG 35
           +PKFG WD  DP S EGFTVIFNK + E++   
Sbjct: 167 VPKFGAWDETDPTSGEGFTVIFNKVKQERQVAA 199


>GSVIVT01020994001 assembled CDS
          Length = 219

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 3   LPKFGEWDVNDPASAEGFTVIFNKARNEKK 32
           +PKFG+WD  +P+SAEG+T IFNK   EK+
Sbjct: 152 VPKFGDWDERNPSSAEGYTHIFNKVHEEKQ 181