Jatropha Genome Database

JcPR01AQ3WW.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01AQ3WW.10 + phase: 0 /pseudo/partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022063001 assembled CDS                                        91   1e-19
GSVIVT01009440001 assembled CDS                                        86   4e-18
GSVIVT01003179001 assembled CDS                                        77   2e-15
GSVIVT01000582001 assembled CDS                                        71   1e-13
GSVIVT01007585001 assembled CDS                                        69   4e-13
GSVIVT01020694001 assembled CDS                                        68   1e-12
GSVIVT01020698001 assembled CDS                                        68   1e-12
GSVIVT01020693001 assembled CDS                                        67   2e-12
GSVIVT01023863001 assembled CDS                                        67   3e-12
GSVIVT01020697001 assembled CDS                                        66   3e-12
GSVIVT01013420001 assembled CDS                                        62   9e-11
GSVIVT01020657001 assembled CDS                                        61   1e-10

>GSVIVT01022063001 assembled CDS
          Length = 245

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 9   LFQMNKKVVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFR 68
           L   + KVV IDG+E+V PFDEK+LQKAVA+QPVSVA+EA G     L +  ++      
Sbjct: 104 LSGKSSKVVSIDGYEDVPPFDEKALQKAVAHQPVSVAVEAGGRALQ-LYVSGIFTGECGT 162

Query: 69  HXYHGVXXXXXXXXXXXXLLDCXKFMGSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
              HG+                    GS WGENGYIRMERN+      KCGIAM++
Sbjct: 163 ALDHGIVAVGYGTENGTDYWIVRNSWGSSWGENGYIRMERNMADAFSGKCGIAMEA 218


>GSVIVT01009440001 assembled CDS
          Length = 388

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 10  FQMNKKVVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRH 69
           ++ N KVV IDG+E+V   DEKSL+KAVANQPVSVAIEA G +F +        R     
Sbjct: 158 YRKNAKVVTIDGYEDVPENDEKSLEKAVANQPVSVAIEAGGREFQLYQSGIFTGRCGTAL 217

Query: 70  XYHGVXXXXXXXXXXXXLLDCXKFMGSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
             HGV                    G+ WGE GYIRMER++      KCGIAM++
Sbjct: 218 -DHGVTAVGYGTENGVDYWIVKNSWGASWGEEGYIRMERDLATSATGKCGIAMEA 271


>GSVIVT01003179001 assembled CDS
          Length = 386

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 13  NKKVVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYH 72
           N +VV IDG+E+V   DE+SL+KAVANQPVSVAIEA G  F +     V+         H
Sbjct: 161 NARVVSIDGYEDVPQNDERSLKKAVANQPVSVAIEAGGRAFQLYQSG-VFTGQCGTQLDH 219

Query: 73  GVXXXXXXXXXXXXLLDCXKFMGSRWGENGYIRMERNVVIHIEAKCGIAMQ 123
           GV                    G  WGE+GYI++ERN+      KCGIA++
Sbjct: 220 GVVAVGYGTENSVDYWIVRNSWGPNWGESGYIKLERNLAGTETGKCGIAIE 270


>GSVIVT01000582001 assembled CDS
          Length = 359

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 64/122 (52%), Gaps = 13/122 (10%)

Query: 9   LFQMNKKVVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFR 68
           + +MN  VV IDG E+V   DE++L KAVA+QPVSVAI+A G D    S   V+      
Sbjct: 226 MLKMNAPVVTIDGHESVPVNDERALMKAVAHQPVSVAIDAGGSDLQFYS-EGVFDGECGT 284

Query: 69  HXYHGVXXXXXXXXXXXXLLDCXKF------MGSRWGENGYIRMERNVVIHIEAKCGIAM 122
              HGV             LD  K+       G+ WGE GYIRM R +    E +CGIAM
Sbjct: 285 ELDHGV-----AIVGYGTTLDGTKYWIVKNSWGAEWGEKGYIRMARGIQA-AEGQCGIAM 338

Query: 123 QS 124
           ++
Sbjct: 339 EA 340


>GSVIVT01007585001 assembled CDS
          Length = 273

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 11  QMNKKVVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHX 70
           ++N  VV IDG E V P +E +L KA ANQP+SVAI+A G  F   S      R      
Sbjct: 139 KVNSPVVSIDGHETVPPNNEDALLKAAANQPISVAIDAGGSAFQFYSEGVFAGRCGTDL- 197

Query: 71  YHGVXXXXXXXXXXXXLLDCXKF------MGSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
            HGV             LD  K+       G+ WGENGYIRM+R +    E  CGIA+++
Sbjct: 198 DHGV-----AIVGYGTTLDGTKYWIVKNSWGTDWGENGYIRMKRGISAK-EGLCGIAVEA 251


>GSVIVT01020694001 assembled CDS
          Length = 320

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 16  VVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGVX 75
             KI+G+E+V   +EK+LQKAVA+QP++VAI+A G +F   S   V+         HGV 
Sbjct: 208 AAKINGYEDVPANNEKALQKAVAHQPIAVAIDAGGSEFQFYSSG-VFTGQCGTELDHGVS 266

Query: 76  XXXXXXXXXXXLLDCXKFM------GSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
                        D  K+       G+ WGE GYIRM+R+V    E  CGIAMQ+
Sbjct: 267 AVGYGTSD-----DGMKYWLVKNSWGTGWGEEGYIRMQRDVTAK-EGLCGIAMQA 315


>GSVIVT01020698001 assembled CDS
          Length = 297

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 16  VVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGVX 75
             KI G+E+V   +EK+LQKAVA+QPV+VAI+A G +F   +   V+         HGV 
Sbjct: 185 AAKIKGYEDVPANNEKALQKAVAHQPVAVAIDAGGFEFQFYTSG-VFTGQCGTELDHGVA 243

Query: 76  XXXXXXXXXXXLLDCXKFM-GSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
                      +    K   G+ WGE GYIRM+R+V    E  CGIAMQ+
Sbjct: 244 AVGYGIGDDGMMYWLVKNSWGTGWGEEGYIRMQRDVTAK-EGLCGIAMQA 292


>GSVIVT01020693001 assembled CDS
          Length = 320

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 16  VVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGVX 75
             KI+G+E+V   +EK+LQKAVA+QP++VAI+ASG +F   S   V+         HGV 
Sbjct: 208 AAKINGYEDVPANNEKALQKAVAHQPIAVAIDASGSEFQFYSSG-VFTGQCGTELDHGVA 266

Query: 76  XXXXXXXXXXXLLDCXKFM------GSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
                        D  K+        + WGE GYIRM+R+V    E  CGIAMQ+
Sbjct: 267 AVGYGTSD-----DGMKYWLVKNSWSTGWGEEGYIRMQRDVTAK-EGLCGIAMQA 315


>GSVIVT01023863001 assembled CDS
          Length = 331

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 16  VVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGVX 75
           +V I G+E+V   DE+SL KA+A+QP+SVAIEASG DF   S   V+         HGV 
Sbjct: 218 IVTISGYEDVPEKDEESLLKALAHQPLSVAIEASGRDFQFYS-GGVFNGPCGTELDHGVA 276

Query: 76  XXXXXXXXXXXLLDCXKFMGSRWGENGYIRMERNVVIHIEAKCGI 120
                       +      G +WGE GYIRM+RN     E  CGI
Sbjct: 277 AVGYGSSKGLDYIIVKNSWGPKWGEKGYIRMKRNTG-KTEGLCGI 320


>GSVIVT01020697001 assembled CDS
          Length = 322

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 13/115 (11%)

Query: 16  VVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGVX 75
             KI+G+E+V   +EK+LQKAV +QP++VAI+A G +F   S   V+         HGV 
Sbjct: 210 AAKINGYEDVPANNEKALQKAVVHQPIAVAIDAGGFEFQFYSSG-VFTGQCGTELDHGVA 268

Query: 76  XXXXXXXXXXXLLDCXKF------MGSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
                        D  K+       G+ WGE GYIRM+R+V    E  CGIAMQ+
Sbjct: 269 AVGYGTSD-----DGMKYWLVKNSWGTGWGEEGYIRMQRDVTAK-EGLCGIAMQA 317


>GSVIVT01013420001 assembled CDS
          Length = 300

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 15  KVVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGV 74
           +VV I G+ +V   +E+S  KA+ANQP+SVAIEAS   F   S   ++         HGV
Sbjct: 186 EVVTISGYHDVPEDNEQSFLKALANQPLSVAIEASSRGFQFYS-GGIFNGHCGTELDHGV 244

Query: 75  XXXXXXXXXXXXLLDCXKFMGSRWGENGYIRMERNVVIHIEAKCGI 120
                        +      GS+WGE GYIRM+RNV    E  CGI
Sbjct: 245 AAVGYGTSKGVDYITVKNSWGSKWGEKGYIRMKRNVG-KPEGICGI 289


>GSVIVT01020657001 assembled CDS
          Length = 354

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 16  VVKIDGFENVTPFDEKSLQKAVANQPVSVAIEASGMDFTVLSIWCVYWRMWFRHXYHGVX 75
           VVKI G+E V P +EK LQ AVA QPVSVAI+A G +F + S   ++     +   H V 
Sbjct: 231 VVKISGYETVPPNNEKILQAAVAKQPVSVAIDAGGYEFQLYSK-GIFNGFCGKQLNHAVT 289

Query: 76  XXXXXXXXXXXLLDCXKFMGSRWGENGYIRMERNVVIHIEAKCGIAMQS 124
                              G+ WGE GY RM R+     E  CGIAM++
Sbjct: 290 VIGYGEDNGKKYWLVKNSWGTGWGEAGYARMIRDSR-DDEGICGIAMEA 337