Jatropha Genome Database

JcCD0179138.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0179138.10 + phase: 1 /pseudo/partial
         (194 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025376001 assembled CDS                                        91   3e-19

>GSVIVT01025376001 assembled CDS
          Length = 499

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 59/104 (56%), Gaps = 35/104 (33%)

Query: 48  CAIIVATIRALKMHGGGPEVVAGRPLDHAYTTENVPLVEAGCVNLARHISNTKSYGVNVV 107
           CA+IVATIRALKMHGGGPEVVAG+PLD AY TENV LVEAG  N A              
Sbjct: 293 CAVIVATIRALKMHGGGPEVVAGKPLDRAYLTENVALVEAGLKNAA-------------- 338

Query: 108 VAVNMFSTDTEAELSAVKNXXXXXXXXXXVVCTHHAHGGKGAVS 151
               +F+   +A                 VVCTHHAHGG+GAV 
Sbjct: 339 ----LFAGAYDA-----------------VVCTHHAHGGRGAVD 361