Jatropha Genome Database

JcCD0162764.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0162764.10 + phase: 1 /partial/short
         (47 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009009001 assembled CDS                                        83   3e-17
GSVIVT01003078001 assembled CDS                                        78   9e-16

>GSVIVT01009009001 assembled CDS
          Length = 386

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 44/47 (93%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +++KLR+LDAYPKINEDFYSRT SGGVIT+ASSI MLLLFISEL
Sbjct: 1  MDNIINKLRNLDAYPKINEDFYSRTLSGGVITLASSIFMLLLFISEL 47


>GSVIVT01003078001 assembled CDS
          Length = 386

 Score = 77.8 bits (190), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/47 (74%), Positives = 41/47 (87%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +  +LR+LDAYPKINEDFYSRTFSGG+IT+ SSIVML LF SEL
Sbjct: 1  MDRVFQRLRNLDAYPKINEDFYSRTFSGGLITLISSIVMLFLFFSEL 47