Jatropha Genome Database

JcCD0145641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0145641.10 + phase: 1 /pseudo/partial/short
         (49 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028236001 assembled CDS                                        60   2e-10

>GSVIVT01028236001 assembled CDS
          Length = 521

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 1  LYGSLAEMKELKKVARKTVLDTNSNDIIHRVVPHYHKWFSQY 42
          L GSL E++ LK  AR +VL+T+SNDII RVVPHYH+W   Y
Sbjct: 50 LSGSLHEIERLKNAARGSVLETSSNDIIQRVVPHYHRWSLDY 91