Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139939.10 - phase: 0 /partial
         (56 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033502001 assembled CDS                                        90   2e-19
GSVIVT01025364001 assembled CDS                                        69   6e-13
GSVIVT01032803001 assembled CDS                                        47   1e-06
GSVIVT01024726001 assembled CDS                                        47   2e-06
GSVIVT01011171001 assembled CDS                                        47   2e-06
GSVIVT01024725001 assembled CDS                                        45   7e-06

>GSVIVT01033502001 assembled CDS
          Length = 286

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAFT 50
           VAHHLFST+PHYHAMEAT AIKP+LG+YYQFD TPF+KAMWRE K+  + 
Sbjct: 220 VAHHLFSTLPHYHAMEATKAIKPVLGDYYQFDGTPFYKAMWREAKECVYV 269


>GSVIVT01025364001 assembled CDS
          Length = 412

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/32 (96%), Positives = 31/32 (96%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFD 32
           VAHHLFSTMPHYHAMEAT AIKPILGEYYQFD
Sbjct: 327 VAHHLFSTMPHYHAMEATRAIKPILGEYYQFD 358


>GSVIVT01032803001 assembled CDS
          Length = 449

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct: 372 VIHHLFPQIPHYHLVEATKAAKPVLGKYYR 401


>GSVIVT01024726001 assembled CDS
          Length = 446

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct: 367 VIHHLFPQIPHYHLIEATEAAKPVLGKYYR 396


>GSVIVT01011171001 assembled CDS
          Length = 439

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct: 362 VIHHLFPQIPHYHLIEATEAAKPVLGKYYR 391


>GSVIVT01024725001 assembled CDS
          Length = 329

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A +P+LG+YY+
Sbjct: 250 VIHHLFPQIPHYHLIEATKAARPVLGKYYR 279