Jatropha Genome Database

JcCD0139598.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139598.10 + phase: 1 /partial
         (83 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019089001 assembled CDS                                       152   3e-38

>GSVIVT01019089001 assembled CDS
          Length = 226

 Score =  152 bits (384), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 79/83 (95%)

Query: 1   DYLLFIVRDVNVNPNPNEVADIKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 60
           DYLLFIVRDVNVNPNP+EVAD+KYV+R+ LKELLRKADAGEEGLKLSPWFRLVVDNFLFK
Sbjct: 144 DYLLFIVRDVNVNPNPDEVADVKYVSRNDLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 203

Query: 61  WWEHVEQGTLKDVVDMQTIHKLT 83
           WW+HVE+GTL +  DM+TIHKLT
Sbjct: 204 WWDHVEKGTLLEAADMKTIHKLT 226