Jatropha Genome Database

JcCD0135314.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0135314.10 - phase: 0 /pseudo/partial
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038094001 assembled CDS                                        54   1e-08

>GSVIVT01038094001 assembled CDS
          Length = 370

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 21  LYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVEKM 62
           LY +FV  +  F   +MAG+VKCHKYSRRR +EGWN  VEK+
Sbjct: 284 LYQEFVQKMN-FNKKKMAGEVKCHKYSRRRSAEGWNIMVEKL 324