Jatropha Genome Database

JcCD0119024.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0119024.10 - phase: 0 /pseudo/partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007435001 assembled CDS                                       101   6e-23
GSVIVT01002031001 assembled CDS                                       101   8e-23
GSVIVT01014386001 assembled CDS                                        92   7e-20
GSVIVT01023575001 assembled CDS                                        67   2e-12
GSVIVT01002062001 assembled CDS                                        65   5e-12
GSVIVT01018050001 assembled CDS                                        64   1e-11
GSVIVT01017899001 assembled CDS                                        51   1e-07

>GSVIVT01007435001 assembled CDS
          Length = 266

 Score =  101 bits (252), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 66/95 (69%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   +G+F  + F + K    FAALGA+EGV+MYWGI GDG 
Sbjct: 110 IEAYRTLRDRGPYPADQVLKDMDGSFGFVLFDS-KAGTVFAALGADEGVKMYWGIGGDGW 168

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           +VISDNLE IK SCAKSFAPFP GCMFHSE GL S
Sbjct: 169 LVISDNLEVIKASCAKSFAPFPTGCMFHSEGGLRS 203


>GSVIVT01002031001 assembled CDS
          Length = 256

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 66/95 (69%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   +G+F  + F + K    FAALGA+EGV+MYWGI GDG 
Sbjct: 110 IEAYRTLRDRGPYPADQVLKDMDGSFGFVLFDS-KAGTVFAALGADEGVKMYWGIGGDGW 168

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           +VISDNLE IK SCAKSFAPFP GCMFHSE GL S
Sbjct: 169 LVISDNLEVIKASCAKSFAPFPTGCMFHSEGGLRS 203


>GSVIVT01014386001 assembled CDS
          Length = 255

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRI---LEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++   LEG+F  + + + K    F ALG++ GV+++WG+A DGS
Sbjct: 110 IEAYRTLRDRGPYPADQVVKDLEGSFAFVVYDS-KAGTVFTALGSDGGVKLFWGVAADGS 168

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VVISD+L  IK  CAKSFAPFP GCMFHS+ GLMS
Sbjct: 169 VVISDDLGVIKAGCAKSFAPFPTGCMFHSDGGLMS 203


>GSVIVT01023575001 assembled CDS
          Length = 147

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 18  LKHIGPYVTVGHTRPIKSSRILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           L+  GPY         +  R L G F  + + +     +F A  A+E V  +WG+  +G 
Sbjct: 10  LRDRGPYPA------DQVVRDLHGKFAFVLYDSSNR-TAFLAADADESVPFFWGVDSEGH 62

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           +V+SD+ E +K  C KSFAPFPKGC F +  GL S
Sbjct: 63  LVLSDDEETVKKGCGKSFAPFPKGCFFTTSGGLRS 97


>GSVIVT01002062001 assembled CDS
          Length = 151

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 32  PIKSSRILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGSVVISDNLEGIKGSC 91
           P +  R LEG F  + F   K    F A   +  + ++WG+AGDGS+V SDN + I  +C
Sbjct: 18  PDQVIRDLEGKFAFILF-DAKGGTLFTARDRDGSINLHWGMAGDGSLVCSDNPKIITEAC 76

Query: 92  AKSFAPFPKGCMFHSEQGLMS 112
            K+ APFP GC+F +  GLMS
Sbjct: 77  GKACAPFPPGCIFMNGSGLMS 97


>GSVIVT01018050001 assembled CDS
          Length = 249

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 37  RILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGSVVISDNLEGIKGSCAKSFA 96
           R L G F  + + +     +F A  A+E V  +WG+  +G +V+SD+ E +K  C  SFA
Sbjct: 125 RDLHGKFAFVLYDSSNR-TAFLAADADESVPFFWGVDSEGHLVLSDDEETVKKGCGISFA 183

Query: 97  PFPKGCMFHSEQGLMS 112
           PFPKGC F +  GL S
Sbjct: 184 PFPKGCFFTTSGGLRS 199


>GSVIVT01017899001 assembled CDS
          Length = 236

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 23  PYVTVGHTRPIKSSRILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGSVVISD 82
           P   VGH         L G+F  + F      + F A      V + WGI  DG V  +D
Sbjct: 121 PNHVVGH---------LSGSFAFIVFDKSTSTL-FVASDQFGKVPLSWGITADGYVAFAD 170

Query: 83  NLEGIKGSCAKSFAPFPKGCMFHSEQG 109
           + E +KG+C KS A FP+GC F +  G
Sbjct: 171 DAELLKGACGKSLASFPQGCFFSTAVG 197