Jatropha Genome Database

JcCD0116228.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0116228.10 - phase: 1 /partial
         (61 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034992001 assembled CDS                                        74   2e-14
GSVIVT01032888001 assembled CDS                                        65   8e-12
GSVIVT01032879001 assembled CDS                                        58   7e-10
GSVIVT01032883001 assembled CDS                                        54   1e-08

>GSVIVT01034992001 assembled CDS
          Length = 857

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 1   GTPVHKDYVVLIPGGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGPNP 60
           G PV+KD+ V +        +W+ALHP+  +K ++YDA+LNG+EIFK+  ++GNLAGPNP
Sbjct: 352 GVPVYKDFAVFVKDEPGDEQLWVALHPSVSMKPEFYDAILNGLEIFKLNDSNGNLAGPNP 411


>GSVIVT01032888001 assembled CDS
          Length = 932

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 48/61 (78%), Gaps = 2/61 (3%)

Query: 1   GTPVHKDYVVLIP--GGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGP 58
           G P++KDY V++P  G + + ++++ LHPNP+ ++ Y DA+LNG+E+FK+++ + +LAGP
Sbjct: 395 GVPIYKDYGVMMPSQGSNKKQNLYIQLHPNPDSETVYNDAILNGIELFKLSNPEKSLAGP 454

Query: 59  N 59
           N
Sbjct: 455 N 455


>GSVIVT01032879001 assembled CDS
          Length = 974

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 4/62 (6%)

Query: 1   GTPVHKDYVV--LIPGGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGP 58
           G P+++DYVV  L  G   + ++WL LHPN +  S+Y + +LNG+E+FK+ +++G+LAG 
Sbjct: 447 GYPIYQDYVVYLLSDGSRRKQELWLDLHPNAD--SKYANVILNGLEMFKLNNSNGSLAGL 504

Query: 59  NP 60
           NP
Sbjct: 505 NP 506


>GSVIVT01032883001 assembled CDS
          Length = 599

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 41/56 (73%), Gaps = 2/56 (3%)

Query: 1   GTPVHKDYVVLIP--GGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGN 54
           G P+++DY V++P  G + +  +++ LHPNP+ ++ Y DA+LNG+E+FK+ + + +
Sbjct: 367 GVPIYRDYGVMMPSQGRNKKQKLYIQLHPNPDYETLYSDAILNGIELFKLINPNSD 422