Jatropha Genome Database

JcCD0112693.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0112693.10 + phase: 0 /partial
         (63 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034488001 assembled CDS                                       127   1e-30
GSVIVT01009904001 assembled CDS                                       118   6e-28
GSVIVT01027176001 assembled CDS                                        85   8e-18
GSVIVT01037430001 assembled CDS                                        83   3e-17
GSVIVT01034944001 assembled CDS                                        70   1e-13
GSVIVT01034754001 assembled CDS                                        70   2e-13
GSVIVT01031267001 assembled CDS                                        69   4e-13
GSVIVT01031374001 assembled CDS                                        69   4e-13
GSVIVT01024105001 assembled CDS                                        55   5e-09

>GSVIVT01034488001 assembled CDS
          Length = 492

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 63/63 (100%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSS 60
           PEYYDGKLGR++GKQARKYQTWSIAGYLVAKM+LEDPSHLGMISLEED+QMKP+I+RSSS
Sbjct: 430 PEYYDGKLGRYVGKQARKYQTWSIAGYLVAKMLLEDPSHLGMISLEEDRQMKPLIKRSSS 489

Query: 61  WTC 63
           WTC
Sbjct: 490 WTC 492


>GSVIVT01009904001 assembled CDS
          Length = 571

 Score =  118 bits (295), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 60/62 (96%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSS 60
           PEYYDGKLGR+IGKQARK+QTWSIAGYLVAKMML+DPSHLGMISLEEDKQ+KP+ +RS S
Sbjct: 509 PEYYDGKLGRYIGKQARKFQTWSIAGYLVAKMMLDDPSHLGMISLEEDKQLKPLFKRSLS 568

Query: 61  WT 62
           W+
Sbjct: 569 WS 570


>GSVIVT01027176001 assembled CDS
          Length = 645

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIRRSSS 60
           PEYYDGK GR++GKQARK+QTWSIAGYLVAKMM+E+ S+L +IS EE+K+    +R + S
Sbjct: 582 PEYYDGKTGRYVGKQARKFQTWSIAGYLVAKMMIENESNLLVISHEEEKKTNK-LRHTRS 640

Query: 61  WTC 63
            +C
Sbjct: 641 ASC 643


>GSVIVT01037430001 assembled CDS
          Length = 408

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 53/60 (88%), Gaps = 1/60 (1%)

Query: 2   EYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKP-VIRRSSS 60
           EYYDGK G ++GKQ+R+ QT SIAGYLV+KM+LE+PSHLG+I+LEED+++KP  I RS++
Sbjct: 340 EYYDGKEGCYVGKQSRRLQTCSIAGYLVSKMLLEEPSHLGIIALEEDEKIKPTTITRSTT 399


>GSVIVT01034944001 assembled CDS
          Length = 673

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 41/51 (80%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQM 51
           PEYYD + GRFIGKQ+R YQTW+IAG+L +KM+LE+P    +++ EED ++
Sbjct: 595 PEYYDTRNGRFIGKQSRLYQTWTIAGFLTSKMLLENPEMASLLAWEEDYEL 645


>GSVIVT01034754001 assembled CDS
          Length = 303

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 39/51 (76%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQM 51
           PEYYD K  RFIGKQA  +QTWSIAGYLVAK++L DP+   ++  EED ++
Sbjct: 226 PEYYDTKKARFIGKQACLFQTWSIAGYLVAKLLLSDPTAAKILITEEDSEL 276


>GSVIVT01031267001 assembled CDS
          Length = 647

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQM 51
           PEYYD + GRFIGKQ+R +QTW+IAGYL +KM+LE+P    ++  EED  +
Sbjct: 570 PEYYDTRNGRFIGKQSRLFQTWTIAGYLTSKMLLENPEMAALLFWEEDYDL 620


>GSVIVT01031374001 assembled CDS
          Length = 541

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 1   PEYYDGKLGRFIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQM 51
           PEYYD K GRFIGKQAR +QTWSIAGYLV+K++L +P    ++   ED  +
Sbjct: 464 PEYYDTKQGRFIGKQARLFQTWSIAGYLVSKLLLANPDAANILVNREDSDL 514


>GSVIVT01024105001 assembled CDS
          Length = 515

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/27 (88%), Positives = 27/27 (100%)

Query: 36  DPSHLGMISLEEDKQMKPVIRRSSSWT 62
           DPSHLGMISLEEDKQMKP+I+RS+SWT
Sbjct: 488 DPSHLGMISLEEDKQMKPLIKRSASWT 514