Jatropha Genome Database

JcCD0109805.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0109805.10 + phase: 2 /partial
         (75 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032688001 assembled CDS                                        69   4e-13
GSVIVT01032694001 assembled CDS                                        68   7e-13
GSVIVT01032689001 assembled CDS                                        67   1e-12
GSVIVT01032687001 assembled CDS                                        67   2e-12

>GSVIVT01032688001 assembled CDS
          Length = 666

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1   DSVFAVLKYIYAFCISDFMPFLLGLDLVGQEKFVLEANKTLRGFHNPLIDERIALWRSGQ 60
           +S+F  L Y+Y F  SD++P L   DL G EK V EA + +   H+P++DERI  WR+G+
Sbjct: 367 NSLFTTLAYLYVFSPSDYLPCLRVFDLDGHEKMVKEALRIINKHHDPIVDERIIQWRNGE 426

Query: 61  RKEIARFACMFLLL 74
           +KE+     +F+ +
Sbjct: 427 KKEVEDILDVFITI 440


>GSVIVT01032694001 assembled CDS
          Length = 576

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1   DSVFAVLKYIYAFCISDFMPFLLGLDLVGQEKFVLEANKTLRGFHNPLIDERIALWRSGQ 60
           +S+F  L Y+YAF  SD++P L   DL G EK V EA   +   H+P++D+RI  WR+G+
Sbjct: 277 NSLFTSLAYLYAFSPSDYLPCLRVFDLDGHEKMVKEALSIISKHHDPIVDDRIIQWRNGE 336

Query: 61  RKEIARFACMFLLL 74
           +KE+     +F+ +
Sbjct: 337 KKEVEDILDVFITI 350


>GSVIVT01032689001 assembled CDS
          Length = 499

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1   DSVFAVLKYIYAFCISDFMPFLLGLDLVGQEKFVLEANKTLRGFHNPLIDERIALWRSGQ 60
           +S+F  L Y+Y F  SD++P L   DL G EK V EA   +   H+P++DERI  WR+G+
Sbjct: 200 NSLFTTLVYLYVFSPSDYLPCLRVFDLDGHEKMVKEALSIINKHHDPIVDERIIQWRNGE 259

Query: 61  RKEIARFACMFLLL 74
           +KE+     +F+ +
Sbjct: 260 KKEVEDILDVFITI 273


>GSVIVT01032687001 assembled CDS
          Length = 484

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1   DSVFAVLKYIYAFCISDFMPFLLGLDLVGQEKFVLEANKTLRGFHNPLIDERIALWRSGQ 60
           +S+F +L Y+Y+F  SD++P L   DL G E  V +A   +   H+P++DERI  WR+G+
Sbjct: 185 NSLFTLLAYLYSFSPSDYLPCLRVFDLDGHETMVKDALSIINKHHDPIVDERIIQWRNGE 244

Query: 61  RKEIARFACMFLLL 74
           +KE+     +FL +
Sbjct: 245 KKEVEDILDVFLTI 258