Jatropha Genome Database

JcCD0108263.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0108263.10 - phase: 2 /pseudo/partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012532001 assembled CDS                                       117   1e-27
GSVIVT01036006001 assembled CDS                                        62   4e-11

>GSVIVT01012532001 assembled CDS
          Length = 923

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 67/74 (90%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++MDYINTSHPNFIGGSKAVE+ALQQ+KSSR  VP++ RQKDG EPDKAP SER+LK+
Sbjct: 593 IEMEMDYINTSHPNFIGGSKAVEMALQQIKSSRLPVPVA-RQKDGLEPDKAPTSERSLKA 651

Query: 62  RAILARQVNGVVAD 75
           RAILAR VNG+VAD
Sbjct: 652 RAILARPVNGIVAD 665


>GSVIVT01036006001 assembled CDS
          Length = 697

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSLRQKDGAEPDKAPASERTLKSR 62
           I ++  YIN+SHPNFIGGSKAVE+A+QQ++SS+         DG + +     E+ L+SR
Sbjct: 418 IEMEKGYINSSHPNFIGGSKAVELAVQQLRSSQVYSTIY---DGTDVESVSTLEQGLRSR 474

Query: 63  AILARQV 69
           A+LA  V
Sbjct: 475 AVLANSV 481