Jatropha Genome Database

JcCD0101804.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0101804.10 + phase: 0 /pseudo
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024815001 assembled CDS                                       136   2e-33

>GSVIVT01024815001 assembled CDS
          Length = 227

 Score =  136 bits (342), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 68/68 (100%)

Query: 40  MDSSHVALVSLLLRAEGFEHYRCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSV 99
           MDSSHVALV+LLLR+EGFEHYRCDRN+SMGMNL+NM+KMLKC+GNDDIITIKADDGSD+V
Sbjct: 1   MDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNMSKMLKCAGNDDIITIKADDGSDTV 60

Query: 100 TFMFESPS 107
           TFMFESP+
Sbjct: 61  TFMFESPT 68