Jatropha Genome Database

JcCD0099951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0099951.10 - phase: 0 /partial/short
         (49 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033734001 assembled CDS                                        82   4e-17
GSVIVT01034942001 assembled CDS                                        51   9e-08

>GSVIVT01033734001 assembled CDS
          Length = 1161

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/40 (87%), Positives = 39/40 (97%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           SF+SECG+PEAGLDYGGL KEFLTDI+KAAF+PEYGLFSQ
Sbjct: 824 SFISECGLPEAGLDYGGLFKEFLTDIAKAAFAPEYGLFSQ 863


>GSVIVT01034942001 assembled CDS
          Length = 1034

 Score = 51.2 bits (121), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 32/40 (80%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           SFV+E G+ EAG+D GG+ K+F+ +I++AAF  +YGLF +
Sbjct: 704 SFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKE 743