Jatropha Genome Database

JcCD0092337.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0092337.10 - phase: 0 /pseudo/partial
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023862001 assembled CDS                                        94   2e-20

>GSVIVT01023862001 assembled CDS
          Length = 367

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/52 (90%), Positives = 49/52 (94%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           V+LAANDLPSINDVTYPELIEII KLKD +GQLVGVD SNLLIANSGNDLPV
Sbjct: 244 VVLAANDLPSINDVTYPELIEIIAKLKDENGQLVGVDTSNLLIANSGNDLPV 295