Jatropha Genome Database

JcCD0077184.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0077184.10 + phase: 0 /partial
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015447001 assembled CDS                                       175   5e-45
GSVIVT01008730001 assembled CDS                                        66   4e-12

>GSVIVT01015447001 assembled CDS
          Length = 370

 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 95/112 (84%)

Query: 1   SDKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCA 60
           S KQ++ EPFY++DLG V+RLMD W Q+LPNV P+YAVKCN +P L+ +LA+LGANFDCA
Sbjct: 102 SQKQKDREPFYILDLGAVVRLMDMWKQALPNVVPYYAVKCNCQPPLITALASLGANFDCA 161

Query: 61  SQAEIETILGLGVNPDRIVYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKI 112
           S+AEIET++ LGV   +IVYANPCK  SH+KYAA VGVNLTTFDS QE+DKI
Sbjct: 162 SRAEIETVMALGVGAQQIVYANPCKGESHLKYAASVGVNLTTFDSMQEIDKI 213


>GSVIVT01008730001 assembled CDS
          Length = 230

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 11/74 (14%)

Query: 1   SDKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLA--------- 51
           S KQE  EPFY++DLGVV+ LM+KW+++LP V+PFYAVK   + A  L L          
Sbjct: 39  SKKQELKEPFYVLDLGVVVSLMEKWSRALPLVRPFYAVKAVFDTASRLGLPRMHVLNIGG 98

Query: 52  --TLGANFDCASQA 63
             T G +FD A+ A
Sbjct: 99  GFTSGPHFDDATSA 112