Jatropha Genome Database

JcCD0075623.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0075623.10 - phase: 2 /partial
         (105 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036477001 assembled CDS                                       189   2e-49

>GSVIVT01036477001 assembled CDS
          Length = 495

 Score =  189 bits (480), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 99/105 (94%)

Query: 1   HVYELGFMEAIAIPQTECFEGAIRFARSEGLIPAPEPTHAIAATIREALHCKETGESKVI 60
           HVYELGFMEAI+IPQ ECF+GAI+FAR+EGLIPAPEPTHAIAATIREALHC+ETGESKVI
Sbjct: 391 HVYELGFMEAISIPQIECFQGAIQFARTEGLIPAPEPTHAIAATIREALHCRETGESKVI 450

Query: 61  LMAMCGHGHFDLTSYEKYLSGNLVDLSFSEDKIQASLSKVPRIMA 105
           L AMCGHGHFDL +YEKYL GN+VDLSF E+KI+ASL+ +P+++A
Sbjct: 451 LTAMCGHGHFDLPAYEKYLQGNMVDLSFEEEKIKASLANIPQVVA 495