Jatropha Genome Database

JcCD0071482.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0071482.10 - phase: 1 /pseudo/partial
         (75 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011026001 assembled CDS                                       100   1e-22
GSVIVT01037591001 assembled CDS                                        77   2e-15
GSVIVT01034615001 assembled CDS                                        73   2e-14

>GSVIVT01011026001 assembled CDS
          Length = 888

 Score =  100 bits (249), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/45 (97%), Positives = 45/45 (100%)

Query: 31  VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 75
           VGTMVVFQGGIGPAGHSTDDLYVLDLTNDK+KWHRVVVQGQGPGP
Sbjct: 109 VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGP 153


>GSVIVT01037591001 assembled CDS
          Length = 1049

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 31  VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 75
           VGTMVV QGGIGPAG S +DL+VLDLT  + +WHRVVVQG GPGP
Sbjct: 154 VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 198


>GSVIVT01034615001 assembled CDS
          Length = 928

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query: 31  VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 75
           VGTMVV QGGIGPAG S++DL+ LDLT  + +WH+V VQG GPGP
Sbjct: 152 VGTMVVIQGGIGPAGLSSEDLHALDLTQQQPRWHKVAVQGSGPGP 196