Jatropha Genome Database

JcCD0070253.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0070253.10 - phase: 1 /pseudo/partial
         (190 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011794001 assembled CDS                                       209   7e-55

>GSVIVT01011794001 assembled CDS
          Length = 822

 Score =  209 bits (532), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 109/125 (87%)

Query: 66  KENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTE 125
           KENDRVYLMRV          AFSMVK M MNEVLDASKE+MF+SLVPDSSAKALSRYTE
Sbjct: 309 KENDRVYLMRVPSPSTLPPLPAFSMVKSMPMNEVLDASKERMFSSLVPDSSAKALSRYTE 368

Query: 126 MVDEVIRTQAEKLQQASELTRVRLKEMDLPESILALEGNFTLPADLKEDVEAVQISGGPA 185
           MVD++IRTQAEKLQQ SEL RVRLKEMDLP+SILALEGNFTLP DLKEDVEAVQI GGPA
Sbjct: 369 MVDDIIRTQAEKLQQGSELARVRLKEMDLPDSILALEGNFTLPTDLKEDVEAVQICGGPA 428

Query: 186 GLEAE 190
           GLEAE
Sbjct: 429 GLEAE 433