Jatropha Genome Database

JcCD0068965.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0068965.10 - phase: 1 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016266001 assembled CDS                                       181   1e-46
GSVIVT01025691001 assembled CDS                                       169   2e-43
GSVIVT01025198001 assembled CDS                                       147   1e-36
GSVIVT01027166001 assembled CDS                                        51   1e-07
GSVIVT01023149001 assembled CDS                                        50   3e-07
GSVIVT01028242001 assembled CDS                                        49   7e-07
GSVIVT01037136001 assembled CDS                                        46   3e-06
GSVIVT01019566001 assembled CDS                                        46   5e-06

>GSVIVT01016266001 assembled CDS
          Length = 583

 Score =  181 bits (458), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/124 (72%), Positives = 102/124 (82%), Gaps = 2/124 (1%)

Query: 1   TTNFSDGSGSAFHQQGLLERSSCEG-FQWYKDNRQENEMSLETGICKVFMESEDVGRTLD 59
           T NFSDGSGSAFHQ G  E SS EG   WYKD+++ N + LETG CKVFMESEDVGRTLD
Sbjct: 459 TPNFSDGSGSAFHQNGPQESSSDEGLLTWYKDHQKTN-LGLETGHCKVFMESEDVGRTLD 517

Query: 60  LSLLRSYEELYRKLADMFGIENSETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTILM 119
           LS+L SYEELYRKLA+MFGIE +E L+NVLYRD  G VKHIGD PF +F+KTARRLTIL 
Sbjct: 518 LSILGSYEELYRKLANMFGIERAEMLSNVLYRDEAGIVKHIGDAPFGEFLKTARRLTILA 577

Query: 120 DSSS 123
           DS++
Sbjct: 578 DSAA 581


>GSVIVT01025691001 assembled CDS
          Length = 580

 Score =  169 bits (429), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/108 (76%), Positives = 91/108 (84%)

Query: 17  LLERSSCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADM 76
           L E SSCEG+Q YK N +E E +LETG CKVFMESEDVGRTLDLSLL SY+EL  KLA M
Sbjct: 466 LFEHSSCEGYQTYKVNHRETEPNLETGHCKVFMESEDVGRTLDLSLLTSYDELCGKLAKM 525

Query: 77  FGIENSETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTILMDSSSD 124
           F IE+SE  N+VLYRD TG+VKHIGDEPFSDF KTA+RLTILMDSSSD
Sbjct: 526 FTIEDSEMRNHVLYRDATGAVKHIGDEPFSDFTKTAKRLTILMDSSSD 573


>GSVIVT01025198001 assembled CDS
          Length = 546

 Score =  147 bits (371), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/100 (70%), Positives = 83/100 (83%), Gaps = 1/100 (1%)

Query: 25  GFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSET 84
           GF W++   Q  E+ L+TG CKVFMESEDVGR+LDLS+L SYEELY +LA+MFGIE SET
Sbjct: 418 GFSWHQ-GFQTTEIGLDTGHCKVFMESEDVGRSLDLSVLGSYEELYTRLANMFGIERSET 476

Query: 85  LNNVLYRDITGSVKHIGDEPFSDFMKTARRLTILMDSSSD 124
            ++VLYRD TG+VKH GDEPFSDF K A+RLTILMDS S+
Sbjct: 477 FSHVLYRDATGAVKHTGDEPFSDFTKKAKRLTILMDSGSN 516


>GSVIVT01027166001 assembled CDS
          Length = 607

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 6   DGSGSAFHQQGLLERSSCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRS 65
           D S S+  Q+ ++  +S    Q     RQ    S  T   KV M+   VGR +DL+ L  
Sbjct: 460 DVSKSSNEQKQVVPEAS----QKETQGRQSCTPSSRTRTKKVQMQGVAVGRAVDLTALEG 515

Query: 66  YEELYRKLADMFGIENSETLNN---VLYRDITGSVKHIGDEPFSDFMKTARRLTI 117
           Y+EL  +L  MF I+      N   V++ D  G +  +GD+P+ +F K  R++ I
Sbjct: 516 YDELISELEKMFEIKGELCPRNKWEVVFTDDEGDMMLVGDDPWQEFCKMVRKIFI 570


>GSVIVT01023149001 assembled CDS
          Length = 678

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 22  SCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIEN 81
           SCE  +    + QE++        KV M+   VGR +DL+    YE+L +KL +MF I+ 
Sbjct: 533 SCEPDKLSLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDRYEDLLKKLEEMFDIQG 592

Query: 82  S----ETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTI 117
                 ++  V+Y D    +  +GD+P+ +F    R++ I
Sbjct: 593 ELCGLTSIWQVVYTDDEDDMMMVGDDPWLEFCSMVRKIFI 632


>GSVIVT01028242001 assembled CDS
          Length = 175

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 36  NEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMF----------GIENSETL 85
           N+ +  T   KV+ME   +GR LDL     Y  L R L  MF          G+ +SE  
Sbjct: 78  NKCNDATFFVKVYMEGIPIGRKLDLFAHDGYHALIRTLDHMFSTTILWAEVDGVLHSEKC 137

Query: 86  NNVLYRDITGSVKHIGDEPFSDFMKTARRLTI 117
           + + Y D  G    +GD P+  F+ T +RL I
Sbjct: 138 HVLTYEDKEGDWMMVGDVPWELFLTTVKRLKI 169


>GSVIVT01037136001 assembled CDS
          Length = 643

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 46  KVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENS----ETLNNVLYRDITGSVKHIG 101
           KV M+   VGR +DL+   SY+EL  KL +MF I+           V+Y D    +  +G
Sbjct: 523 KVHMQGMAVGRAVDLTQFSSYKELLSKLEEMFDIKGELCGPTKKWQVVYTDDEDDMMMVG 582

Query: 102 DEPFSDFMKTARRLTI 117
           D+P+ +F    R++ I
Sbjct: 583 DDPWHEFCSMVRKIFI 598


>GSVIVT01019566001 assembled CDS
          Length = 682

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 46  KVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIEN---SETLNNVLYRDITGSVKHIGD 102
           KV M+   VGR +DL+ L  Y+EL  +L +MF I+          +++ D  G +  +GD
Sbjct: 574 KVQMQGIAVGRAVDLTALEGYDELIDELEEMFEIKGELRPRYKWEIVFTDDEGDMMLVGD 633

Query: 103 EPFSDFMKTARRLTI 117
           +P+ +F    RR+ I
Sbjct: 634 DPWPEFCNMVRRIFI 648