Jatropha Genome Database

JcCD0062953.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062953.10 - phase: 2 /pseudo/partial
         (76 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009198001 assembled CDS                                        57   1e-09

>GSVIVT01009198001 assembled CDS
          Length = 324

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 31/34 (91%), Gaps = 1/34 (2%)

Query: 32  TPVDIKPSIMEGE-YSGNQDEHGTPEDPSKAVTE 64
           TP+D+KPSIMEGE +SG+QDEH TPEDPSKAV E
Sbjct: 219 TPIDVKPSIMEGENFSGSQDEHITPEDPSKAVAE 252