Jatropha Genome Database

JcCD0062698.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062698.10 + phase: 0 /partial
         (144 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009299001 assembled CDS                                        92   7e-20
GSVIVT01007165001 assembled CDS                                        87   2e-18

>GSVIVT01009299001 assembled CDS
          Length = 475

 Score = 92.4 bits (228), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 76/136 (55%), Gaps = 31/136 (22%)

Query: 1   MFLDQEKVGERLHDSPSLSMLSSNIDMKSKENTFFISKG------CSQIEFGLVXXXXXX 54
           +FL++E VGER+ ++  LS+LSS ID KSKEN F + K        S+  FGLV      
Sbjct: 235 IFLNKENVGERMQETQGLSILSSTIDQKSKENQFSLPKQQIPYEESSRAGFGLVPSNSLL 294

Query: 55  XXXXXXXXXXXCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSDKSSVSWPQLDVQSDR 114
                      CRNF                     DDWPK+QSD++++SWP +D+QSDR
Sbjct: 295 SKSSSFMN---CRNF---------------------DDWPKNQSDRTAISWPDIDLQSDR 330

Query: 115 TQLSISIPTIAHTDYM 130
           TQLSISIP +A +D++
Sbjct: 331 TQLSISIP-MASSDFI 345


>GSVIVT01007165001 assembled CDS
          Length = 558

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 82/140 (58%), Gaps = 9/140 (6%)

Query: 11  RLHDSPSLSMLSSNIDMKSKENTFFISK------GCSQIEFGLVXXXXXXXXXXXXXXXX 64
           RL +   LSM+S  +D+KS++  F ISK         Q EFG V                
Sbjct: 339 RLQEPQGLSMISPTVDLKSRDTPFSISKLPIPFEESPQSEFGFVSSDSLLNPSERGSYMN 398

Query: 65  XCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSDKSSVSWPQLDVQSDRTQLSISIPTI 124
             RN+    D +DQET  QH  RQFIDDWPK QS++S ++WP+ +++SD TQLSISIP +
Sbjct: 399 -SRNYTPFLDFSDQETQDQHPFRQFIDDWPKDQSNRSDIAWPE-ELKSDWTQLSISIP-M 455

Query: 125 AHTDYMSSTSSPNNERVTLS 144
           + +D+ SS+SSP  E++  S
Sbjct: 456 SSSDFSSSSSSPTQEKLAFS 475