Jatropha Genome Database

JcCD0062613.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062613.10 - phase: 0 /partial
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005195001 assembled CDS                                       234   1e-62
GSVIVT01008734001 assembled CDS                                       221   1e-58
GSVIVT01023350001 assembled CDS                                       213   2e-56
GSVIVT01027587001 assembled CDS                                       135   6e-33
GSVIVT01019879001 assembled CDS                                       134   2e-32
GSVIVT01035853001 assembled CDS                                       124   1e-29
GSVIVT01017316001 assembled CDS                                       123   2e-29
GSVIVT01016876001 assembled CDS                                       105   7e-24
GSVIVT01015542001 assembled CDS                                       103   3e-23
GSVIVT01015543001 assembled CDS                                        77   2e-15

>GSVIVT01005195001 assembled CDS
          Length = 1607

 Score =  234 bits (596), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 106/124 (85%), Positives = 116/124 (93%)

Query: 1    GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYK 60
            G V++H+TCWEDICHAI+EAHH+VYIVGWSIYHKVKL+REPTRPLP GG+L LGDLLKYK
Sbjct: 896  GQVYRHETCWEDICHAIVEAHHMVYIVGWSIYHKVKLIREPTRPLPRGGDLTLGDLLKYK 955

Query: 61   SQEGVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLSI 120
            S+EGVRVLMLVWDD+TSH KFFINT GVM+THDEETRKFFKHSSV CVLSPRYASSKLS 
Sbjct: 956  SEEGVRVLMLVWDDRTSHDKFFINTKGVMETHDEETRKFFKHSSVICVLSPRYASSKLSF 1015

Query: 121  FKQQ 124
             KQQ
Sbjct: 1016 IKQQ 1019



 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 52/59 (88%)

Query: 1   GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKY 59
           G V+K   CWEDICHAI+EAHH++Y+VGWSI+HKVKL+RE TRPLP GG L+LG+LLKY
Sbjct: 610 GIVYKRGQCWEDICHAIVEAHHMIYLVGWSIFHKVKLIREHTRPLPRGGELSLGELLKY 668


>GSVIVT01008734001 assembled CDS
          Length = 823

 Score =  221 bits (562), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 114/125 (91%), Gaps = 1/125 (0%)

Query: 1   GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYK 60
           G V++H  CWEDICH+ILEAHHLVYIVGWS+YHKVKLVREPTRPLPSGGNLNLG+LLKYK
Sbjct: 172 GVVYQHGKCWEDICHSILEAHHLVYIVGWSVYHKVKLVREPTRPLPSGGNLNLGELLKYK 231

Query: 61  SQEGVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASS-KLS 119
           SQEGVRVL+LVWDDKTSHS+F +NT GVMQTHDEETRKFFKHSSV CVLSPRYAS  K  
Sbjct: 232 SQEGVRVLLLVWDDKTSHSRFLVNTVGVMQTHDEETRKFFKHSSVLCVLSPRYASKRKFK 291

Query: 120 IFKQQ 124
           I K++
Sbjct: 292 IAKER 296


>GSVIVT01023350001 assembled CDS
          Length = 842

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 111/124 (89%)

Query: 1   GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYK 60
           G +F+   CWE+ICHA+LEAHHL+YI+GWSI+H VKL+REPT+P+P+GG L+LG+LLKYK
Sbjct: 219 GKIFQQGQCWEEICHAMLEAHHLIYIIGWSIFHPVKLLREPTKPVPAGGELSLGELLKYK 278

Query: 61  SQEGVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLSI 120
           S+EGVRVLML+WDDKTSH +    T GVMQTHDEETRKFFKHS V+CVLSPRYAS+KLSI
Sbjct: 279 SEEGVRVLMLIWDDKTSHDRLLFKTEGVMQTHDEETRKFFKHSGVHCVLSPRYASNKLSI 338

Query: 121 FKQQ 124
           FKQQ
Sbjct: 339 FKQQ 342


>GSVIVT01027587001 assembled CDS
          Length = 940

 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 84/124 (67%), Gaps = 4/124 (3%)

Query: 1   GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYK 60
           G  + H  CW DI  AI +A  L+YI GWS++ KV+LVR+ +    S     LG+LLK K
Sbjct: 329 GTPYVHGKCWHDIFDAICQAQRLIYITGWSVWDKVRLVRDAS----SAAEYTLGELLKSK 384

Query: 61  SQEGVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLSI 120
           SQEGVRVL+L+WDD TS +     T G+MQTHDEETR+FFKHSSV  +L PR+A  + S 
Sbjct: 385 SQEGVRVLLLLWDDPTSRNILGYKTDGIMQTHDEETRRFFKHSSVQVLLCPRFAGKRHSW 444

Query: 121 FKQQ 124
            KQ+
Sbjct: 445 IKQR 448


>GSVIVT01019879001 assembled CDS
          Length = 839

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 80/121 (66%), Gaps = 4/121 (3%)

Query: 4   FKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYKSQE 63
           F+H  CW DI  AI +A  L+YI GWS+YH V+L+R+      +     LG LLK KSQE
Sbjct: 232 FEHGKCWHDIFQAISQARRLIYITGWSVYHSVRLIRDTD----NSTEFMLGHLLKTKSQE 287

Query: 64  GVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLSIFKQ 123
           GVRVL+LVWDD TS S     T G+MQT+DEETR+FFKHSSV  +L PR A    S  KQ
Sbjct: 288 GVRVLLLVWDDPTSRSILGYKTDGIMQTYDEETRRFFKHSSVQVLLCPRSAGKGHSWIKQ 347

Query: 124 Q 124
           Q
Sbjct: 348 Q 348


>GSVIVT01035853001 assembled CDS
          Length = 752

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 1   GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYK 60
           G   ++  CWEDI +AI  A HL+YI GWS+Y K+ LVR+   P P+   + LG+LLK K
Sbjct: 143 GRFHEYHRCWEDIFYAIYRAQHLIYITGWSVYTKITLVRDSMEPKPAQIMMTLGELLKLK 202

Query: 61  SQEGVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLS 119
           + +GVRVLML+WDD+TS     +   G+M+THD+ET  +F+ + V CVL PRY+    S
Sbjct: 203 ADQGVRVLMLIWDDRTSVEA--LKKDGLMETHDQETADYFRDTKVRCVLCPRYSDRGRS 259


>GSVIVT01017316001 assembled CDS
          Length = 337

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 3/123 (2%)

Query: 1   GDVFKHDTCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYK 60
           G  ++   CWED+  AI  A HL+YI GWS+Y ++ LVR+  RP P GG+L +G+LLK K
Sbjct: 181 GKYYEPRRCWEDVFDAINNAKHLIYITGWSVYTEITLVRDSRRPKP-GGDLTIGELLKKK 239

Query: 61  SQEGVRVLMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLSI 120
           + EGVRVLMLVWDD+TS     +   G+M THDEET  +F  + V+CVL PR      SI
Sbjct: 240 ASEGVRVLMLVWDDRTSVP--LLKKDGLMGTHDEETEHYFHDTDVHCVLCPRNPDDGGSI 297

Query: 121 FKQ 123
            + 
Sbjct: 298 VQD 300


>GSVIVT01016876001 assembled CDS
          Length = 950

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 10  WEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYKSQEGVRVLM 69
           WED+  AI +A +L+YI GWS   K+ LVR+P   +P G  + LG+LLK K++EGV V +
Sbjct: 387 WEDVYKAIDDAKYLIYIAGWSFNPKMVLVRDPQTDIPYGHGVKLGELLKRKAEEGVAVRI 446

Query: 70  LVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPR 112
           +VWDD+TS     I   GVM THDEE   +FKH+ V C L PR
Sbjct: 447 MVWDDETSLP--LIKNEGVMSTHDEEAFAYFKHTKVVCKLCPR 487


>GSVIVT01015542001 assembled CDS
          Length = 703

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 73/115 (63%), Gaps = 11/115 (9%)

Query: 9   CWEDICHAILEAHHLVYIVGWSIYHKVKLV-REPTRPLPSGGNLNLGDLLKYKSQEGVRV 67
           CWEDI HAI  A HLVYI GWS+Y K  L+ R+ T        L LG+LLK K+ EGV V
Sbjct: 186 CWEDIFHAISNAKHLVYITGWSLYTKTTLLFRKKT--------LTLGELLKKKASEGVTV 237

Query: 68  LMLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVNCVLSPRYASSKLSIFK 122
           LML+W+D+TS     +   G+M TH E+T K+F  + V+CVL PR   + LSI +
Sbjct: 238 LMLLWEDRTSVK--LLKKDGLMATHGEDTGKYFHGTGVHCVLCPRNPDNGLSIVQ 290


>GSVIVT01015543001 assembled CDS
          Length = 604

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 7/69 (10%)

Query: 9   CWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTRPLPSGGNLNLGDLLKYKSQEGVRVL 68
           CWEDI HAI  A  L+YI GWS+Y K+ L       L +     LG+LLK K+ EGVRVL
Sbjct: 181 CWEDIFHAISNAKQLIYITGWSVYTKITL-------LFNKKTSTLGELLKKKASEGVRVL 233

Query: 69  MLVWDDKTS 77
           MLVWDD+TS
Sbjct: 234 MLVWDDRTS 242