Jatropha Genome Database

JcCD0058471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0058471.10 - phase: 1 /partial
         (57 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011026001 assembled CDS                                       117   1e-27
GSVIVT01034615001 assembled CDS                                        77   2e-15
GSVIVT01037591001 assembled CDS                                        47   1e-06

>GSVIVT01011026001 assembled CDS
          Length = 888

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG 55
           KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG
Sbjct: 176 KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG 230


>GSVIVT01034615001 assembled CDS
          Length = 928

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 43/56 (76%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGM 56
           KR L+D WALDT+ KPY W +L PEG+ P   MYATASARSDG+ LL GGRD++ +
Sbjct: 219 KRPLADVWALDTSAKPYKWLKLEPEGEGPPPCMYATASARSDGLLLLFGGRDANSV 274


>GSVIVT01037591001 assembled CDS
          Length = 1049

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRP 29
           KR L+D WALDTA KPY W++L PEG+ P
Sbjct: 221 KRPLADVWALDTAAKPYEWRKLEPEGEGP 249