Jatropha Genome Database

JcCD0055831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055831.10 + phase: 0 /partial
         (87 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028204001 assembled CDS                                        95   6e-21
GSVIVT01003201001 assembled CDS                                        85   6e-18
GSVIVT01003204001 assembled CDS                                        85   6e-18
GSVIVT01014439001 assembled CDS                                        83   2e-17
GSVIVT01030053001 assembled CDS                                        82   7e-17
GSVIVT01020858001 assembled CDS                                        56   3e-09
GSVIVT01013450001 assembled CDS                                        56   3e-09
GSVIVT01037111001 assembled CDS                                        45   6e-06

>GSVIVT01028204001 assembled CDS
          Length = 183

 Score = 95.1 bits (235), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 45 SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD
Sbjct: 15 SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 57


>GSVIVT01003201001 assembled CDS
          Length = 241

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 43/60 (71%), Gaps = 9/60 (15%)

Query: 28 MGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          MG G+ TM             WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 39 MGTGKFTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSAD 89


>GSVIVT01003204001 assembled CDS
          Length = 236

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 43/60 (71%), Gaps = 9/60 (15%)

Query: 28 MGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          MG G+ TM             WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 34 MGTGKFTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSAD 84


>GSVIVT01014439001 assembled CDS
          Length = 231

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 43/60 (71%), Gaps = 9/60 (15%)

Query: 28 MGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          MG G+ TM             WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 1  MGTGKYTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSAD 51


>GSVIVT01030053001 assembled CDS
          Length = 172

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 42/53 (79%), Gaps = 2/53 (3%)

Query: 35 MRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          MR+T     +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 1  MRRTVKS--TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 51


>GSVIVT01020858001 assembled CDS
          Length = 147

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%), Gaps = 2/36 (5%)

Query: 35 MRKTA--SKNVSSGSPWYGPDRVKYLGPFSGEPPSY 68
          MRK+   SK VSSGSPWYGPDRVKYLGPFS +P ++
Sbjct: 1  MRKSVAKSKAVSSGSPWYGPDRVKYLGPFSADPETF 36


>GSVIVT01013450001 assembled CDS
          Length = 331

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 11  PSLAGKAVK---LGPSAPELMGNGRVTMRKTASK------NVSSGSPWYGPDRVKYLGPF 61
           P  A KA+    LG S    M   +    K +SK         + S WYG +R ++LGP 
Sbjct: 62  PFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPI 121

Query: 62  SGEPPSYLTGEFPGDYGWDTAGLSAD 87
             + P+YLTGE PGDYG+D AGL  D
Sbjct: 122 PYDYPAYLTGELPGDYGFDIAGLGKD 147


>GSVIVT01037111001 assembled CDS
          Length = 290

 Score = 45.1 bits (105), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 49  WYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLS 85
           WYGPDR  +L  G     E P+YLTGE PGDYG+D  GLS
Sbjct: 72  WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLS 111