Jatropha Genome Database

JcCD0055602.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055602.10 - phase: 2 /pseudo/partial
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035591001 assembled CDS                                        65   6e-12

>GSVIVT01035591001 assembled CDS
          Length = 884

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%)

Query: 50  KLESAHDNIPTYYVVFSNYNDYDSVSRIFCATRTCLVHCSLDTETESMVKKVLSVLKMEE 109
           ++ + HDNIP + +VFS+  +   +SRI CA RTC+ HC L + ++ MV++++  L ME 
Sbjct: 335 EVGAPHDNIPEFCIVFSDTKENSCISRILCAIRTCIAHCHLVSRSDWMVEEIMHALLMEV 394

Query: 110 KLLPK 114
            LLPK
Sbjct: 395 DLLPK 399