Jatropha Genome Database

JcCD0054966.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054966.10 - phase: 0 
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035337001 assembled CDS                                       127   1e-30
GSVIVT01016905001 assembled CDS                                        84   2e-17

>GSVIVT01035337001 assembled CDS
          Length = 671

 Score =  127 bits (318), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 65/72 (90%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNHAVLPLNPSK 60
          MKRGKD+EKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLS+PSQR N  V+PL  + 
Sbjct: 1  MKRGKDEEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSVPSQRCNPGVMPLKSNN 60

Query: 61 ASNLIPAASSSQ 72
          ASNL+P ASSSQ
Sbjct: 61 ASNLVPPASSSQ 72


>GSVIVT01016905001 assembled CDS
          Length = 730

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 11 MGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPS-QRFNHAVLPLNPSKASNLIPAAS 69
          M P+FPRLHVND EKGGPRAPPRNKMALYEQLS+P     +  +LPL P+ + +L+P+A 
Sbjct: 1  MSPLFPRLHVNDAEKGGPRAPPRNKMALYEQLSVPKVPSRSTVILPLLPNNSGSLVPSAP 60

Query: 70 SSQ 72
          S+Q
Sbjct: 61 STQ 63