Jatropha Genome Database

JcCD0053272.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0053272.10 + phase: 0 /pseudo/partial
         (177 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022436001 assembled CDS                                       203   3e-53
GSVIVT01018933001 assembled CDS                                        96   1e-20
GSVIVT01026718001 assembled CDS                                        81   3e-16
GSVIVT01013139001 assembled CDS                                        51   2e-07

>GSVIVT01022436001 assembled CDS
          Length = 354

 Score =  203 bits (517), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 102/128 (79%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           QI KVLE I KKEGLQLP GFA RIAEKSNRSLRRAILSFETCRVQQYPFT+NQA+PPMD
Sbjct: 193 QITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQYPFTNNQAMPPMD 252

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEIIXXXXXXXXXXXXXXXXXXX 137
           WEEYVSEIA+DIM+EQSPK+LFQVRGKLYELLINCIPPEII                   
Sbjct: 253 WEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLELLKKLDAELKHE 312

Query: 138 XSHWAAYY 145
             HWAAYY
Sbjct: 313 VCHWAAYY 320


>GSVIVT01018933001 assembled CDS
          Length = 708

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 1/131 (0%)

Query: 15  ILVQIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIP 74
           +  +I++VL  I +KE   LP  FAA+IA KS + LR+AI++ E C+   YPF  +Q I 
Sbjct: 544 VTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKAHNYPFLDDQPI- 602

Query: 75  PMDWEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEIIXXXXXXXXXXXXXXXX 134
           P+ WEE + E+A +++ + SP +LF +RGK+ +LL++ + P++I                
Sbjct: 603 PLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHPKLILQKLVEQFLKGTDASQ 662

Query: 135 XXXXSHWAAYY 145
                +W AYY
Sbjct: 663 KRDLYYWHAYY 673


>GSVIVT01026718001 assembled CDS
          Length = 530

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           +IV+VLELI K+E + LP   A +I   S  +LR+AI SFE     +YPF  +Q I    
Sbjct: 397 EIVEVLELIAKQESINLPRELAEKIVGNSKNNLRQAIRSFEATWKFKYPFEEDQEI-RTG 455

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEII 118
           WE+ ++ IA +I+ EQ+PK+L+ +RGKL +L  + +  E I
Sbjct: 456 WEDDIARIAKNIIEEQTPKQLYNIRGKLQKLTEHNVASEFI 496


>GSVIVT01013139001 assembled CDS
          Length = 325

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 17  VQIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFE 58
           VQI++VLE I K EG++LPP  A  IAEKS  S+++AI SFE
Sbjct: 278 VQIIEVLEFIAKCEGIELPPRLAENIAEKSKHSIQQAIRSFE 319