Jatropha Genome Database

JcCD0051435.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051435.10 - phase: 2 /pseudo/partial
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029933001 assembled CDS                                       177   5e-45
GSVIVT01000835001 assembled CDS                                       174   3e-44

>GSVIVT01029933001 assembled CDS
          Length = 1239

 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 101/153 (66%), Gaps = 44/153 (28%)

Query: 12  KIPGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLA 71
           K P  +  DFLI   +VSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLA
Sbjct: 444 KDPWSERVDFLI-EVMVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLA 502

Query: 72  LPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMA 131
           LPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEA                       
Sbjct: 503 LPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEA----------------------- 539

Query: 132 VPIKEFKIAEVKQPNIGEVKPSSVTAEVTFSIS 164
                               PSSVTA VTFSIS
Sbjct: 540 --------------------PSSVTAAVTFSIS 552


>GSVIVT01000835001 assembled CDS
          Length = 1461

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/95 (90%), Positives = 88/95 (92%), Gaps = 1/95 (1%)

Query: 14  PGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 73
           P  +  DFLI   +VSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP
Sbjct: 569 PWSERVDFLI-EVMVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 627

Query: 74  KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEA 108
           KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEA
Sbjct: 628 KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEA 662