Jatropha Genome Database

JcCD0051196.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051196.10 - phase: 0 /pseudo/partial
         (309 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035560001 assembled CDS                                       140   7e-34
GSVIVT01032958001 assembled CDS                                       102   2e-22

>GSVIVT01035560001 assembled CDS
          Length = 1006

 Score =  140 bits (353), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 71/76 (93%)

Query: 2   STNLLDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSXE 61
           S +L+D+IWA+QRR+EA+KLYYRVLEAMCTAEAQ+LHA NLTSLLTNERFHRCMLACS E
Sbjct: 472 SASLMDSIWAQQRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFHRCMLACSAE 531

Query: 62  LVLAXHKTXTMLFPAV 77
           LVLA HKT TMLFPAV
Sbjct: 532 LVLATHKTVTMLFPAV 547



 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 66/72 (91%), Gaps = 1/72 (1%)

Query: 193 KRSCPDYRSVLVERNSFTSPVKDRLLAFSNLKSKL-PPPLQSAFASPTRPNPGGGGETCA 251
           KR CPDYRSVLVERNSFTSPVKDR LA +NLKSKL PPPLQSAFASPTRPNPG  GETCA
Sbjct: 664 KRVCPDYRSVLVERNSFTSPVKDRFLALNNLKSKLPPPPLQSAFASPTRPNPGREGETCA 723

Query: 252 ETGINVFFTKVL 263
           ETGIN+FF+K++
Sbjct: 724 ETGINIFFSKII 735


>GSVIVT01032958001 assembled CDS
          Length = 588

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%)

Query: 1   QSTNLLDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSX 60
            +++L+++ W EQR+ EALKLYY+VLE++C +EAQ L   NLT LLTNERFHRCMLACS 
Sbjct: 89  HNSSLMNSGWIEQRQEEALKLYYKVLESICESEAQKLQGRNLTQLLTNERFHRCMLACSA 148

Query: 61  ELVLAXHKTXTMLFPAV 77
           ELV A H    MLFP V
Sbjct: 149 ELVSAAHMGVRMLFPRV 165



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query: 234 AFASPTRPNPGGGGETCAETGINVFFTKV 262
           AFASPT+PNPGG G TC +TGI + F KV
Sbjct: 311 AFASPTQPNPGGRGSTCLDTGIKLLFEKV 339