Jatropha Genome Database

JcCC0408522.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCC0408522.10 - phase: 0 /pseudo/partial
         (260 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035560001 assembled CDS                                       427   e-120
GSVIVT01032958001 assembled CDS                                       250   5e-67

>GSVIVT01035560001 assembled CDS
          Length = 1006

 Score =  427 bits (1098), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/233 (89%), Positives = 218/233 (93%), Gaps = 1/233 (0%)

Query: 1   EAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI 60
           EAQ+LHA NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI
Sbjct: 503 EAQVLHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI 562

Query: 61  ESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAE 120
           ESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL VAR +LSAE+NRLGLLAE
Sbjct: 563 ESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARAALSAEVNRLGLLAE 622

Query: 121 PMPSLDAIAMRINFSSGGLPPMPSLQKHELCPGQNGDIRSPKRSCPDYRSVLVERNSFTS 180
           PMPSLDAI+M IN S GGLPP+PSLQK E  PGQNGDIRSPKR CPDYRSVLVERNSFTS
Sbjct: 623 PMPSLDAISMHINASCGGLPPVPSLQKRESSPGQNGDIRSPKRVCPDYRSVLVERNSFTS 682

Query: 181 PVKDRLLAFSNLKSKL-PPPLQSAFASPTRPNPGGGGETCAETGINVFFTKVL 232
           PVKDR LA +NLKSKL PPPLQSAFASPTRPNPG  GETCAETGIN+FF+K++
Sbjct: 683 PVKDRFLALNNLKSKLPPPPLQSAFASPTRPNPGREGETCAETGINIFFSKII 735


>GSVIVT01032958001 assembled CDS
          Length = 588

 Score =  250 bits (638), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/234 (61%), Positives = 165/234 (70%), Gaps = 18/234 (7%)

Query: 1   EAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI 60
           EAQ L   NLT LLTNERFHRCMLACSAELV A H  V MLFP VLER GITAFDLS+V 
Sbjct: 121 EAQKLQGRNLTQLLTNERFHRCMLACSAELVSAAHMGVRMLFPRVLERIGITAFDLSRVT 180

Query: 61  ESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAE 120
           ESFI+HE SLPREL+R+LNS+EE++LESMVW KGSS+YNSL VARPSL+ EI RLGLLA+
Sbjct: 181 ESFIKHEGSLPRELKRYLNSMEEQMLESMVWGKGSSLYNSLIVARPSLAEEIRRLGLLAK 240

Query: 121 PMPSLDAIAMRINFSSGGLPPMPSLQKHELCPGQNGDIRSPKRSCPDYRSVLVERNSFTS 180
           PMPSLDAIA     S GGLP       H   PGQNG+ RS ++   +        NS   
Sbjct: 241 PMPSLDAIAADNLLSYGGLP-------HP--PGQNGNARSSEKVSSEL------HNSSAL 285

Query: 181 PVKDRLLAFSN---LKSKLPPPLQSAFASPTRPNPGGGGETCAETGINVFFTKV 231
           P+K+   A ++    K    PPL SAFASPT+PNPGG G TC +TGI + F KV
Sbjct: 286 PMKEHSPALNDQKPRKPPPSPPLLSAFASPTQPNPGGRGSTCLDTGIKLLFEKV 339