Jatropha Genome Database

JcCC0332622.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCC0332622.10 - phase: 0 
         (79 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011101001 assembled CDS                                        58   9e-10
GSVIVT01010737001 assembled CDS                                        56   4e-09
GSVIVT01019766001 assembled CDS                                        55   6e-09
GSVIVT01035981001 assembled CDS                                        48   1e-06
GSVIVT01019765001 assembled CDS                                        47   1e-06

>GSVIVT01011101001 assembled CDS
          Length = 170

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 1   MGSSIKWNFTKFLINREGQVINRYGPTTNPLSFEV 35
           +GS IKWNFTKFL+++EG V+ RYGPTT PL+ E 
Sbjct: 127 LGSRIKWNFTKFLVDKEGTVLARYGPTTAPLTIEA 161


>GSVIVT01010737001 assembled CDS
          Length = 167

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 2   GSSIKWNFTKFLINREGQVINRYGPTTNPLSFE 34
           G  IKWNFTKFL+++EG+V++RY PTT+PL  E
Sbjct: 125 GDGIKWNFTKFLVDKEGKVVDRYAPTTSPLKIE 157


>GSVIVT01019766001 assembled CDS
          Length = 168

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 30/34 (88%)

Query: 1   MGSSIKWNFTKFLINREGQVINRYGPTTNPLSFE 34
            G +IKWNF+KFL++++G+V++RY PTT+PLS E
Sbjct: 125 FGDNIKWNFSKFLVDKDGKVVDRYAPTTSPLSIE 158


>GSVIVT01035981001 assembled CDS
          Length = 207

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 1   MGSSIKWNFTKFLINREGQVINRYGPTTNPLSFE 34
           +G  IKWNF KFL+++ G+V+ RY PTT+P   E
Sbjct: 165 LGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIE 198


>GSVIVT01019765001 assembled CDS
          Length = 170

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)

Query: 1   MGSSIKWNFTKFLINREGQVINRYGPTTNPLSFE 34
            G  I+WNF KFL+++ G++++RY PTT+PL+ E
Sbjct: 127 FGDDIQWNFGKFLVDKNGKIVDRYYPTTSPLTVE 160