Jatropha Genome Database

JcCB1007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1007071.10 + phase: 0 /partial/short
         (33 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006719001 assembled CDS                                        56   3e-09
GSVIVT01030034001 assembled CDS                                        51   1e-07
GSVIVT01037761001 assembled CDS                                        50   2e-07

>GSVIVT01006719001 assembled CDS
          Length = 340

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNYDW   ++NSKLLES +YI
Sbjct: 191 ELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESTNYI 226


>GSVIVT01030034001 assembled CDS
          Length = 342

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKN+DW   ++NS+LL+S +YI
Sbjct: 190 ELLTRHKSTVAEFLSKNFDWFFREYNSQLLQSPNYI 225


>GSVIVT01037761001 assembled CDS
          Length = 336

 Score = 49.7 bits (117), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FL  NYDW   ++N+KLLES++Y+
Sbjct: 190 ELLTRHKSTVAEFLKWNYDWFFAEYNTKLLESENYV 225