Jatropha Genome Database

JcCB1005111.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1005111.20 + phase: 0 
         (68 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025296001 assembled CDS                                       122   3e-29
GSVIVT01002005001 assembled CDS                                        96   3e-21
GSVIVT01008142001 assembled CDS                                        66   3e-12
GSVIVT01020575001 assembled CDS                                        49   3e-07

>GSVIVT01025296001 assembled CDS
          Length = 296

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/68 (91%), Positives = 66/68 (97%)

Query: 1   MMMTSGEAVKYKSSYDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLAGYDKLQMIVFG 60
           MMMTSGEAVKYKSS DAF+QILKNEGAKSLFKGAGANILRA+AGAGVLAGYDKLQ++V G
Sbjct: 229 MMMTSGEAVKYKSSLDAFNQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLG 288

Query: 61  KKYGSGGA 68
           KKYGSGGA
Sbjct: 289 KKYGSGGA 296


>GSVIVT01002005001 assembled CDS
          Length = 164

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 1  MMMTSGEAVKYKSSYDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLAGYDKLQMIVFG 60
          MMMTSGEAVK+KS +DAF+Q+LKNEG KSLFKGA ANIL A+A AGVLAGYDKLQ I+  
Sbjct: 33 MMMTSGEAVKHKSFFDAFAQVLKNEGIKSLFKGADANILCAVADAGVLAGYDKLQEILIT 92

Query: 61 K 61
          +
Sbjct: 93 R 93


>GSVIVT01008142001 assembled CDS
          Length = 310

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 46/64 (71%)

Query: 1   MMMTSGEAVKYKSSYDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLAGYDKLQMIVFG 60
           MM+TSG+ +KY S+  A  +I++ EG  +L++G  AN+L  +AGAGVLAGYD+L  I + 
Sbjct: 240 MMLTSGQPLKYSSTMHAVLEIVRLEGFTALYRGVTANMLLGMAGAGVLAGYDQLHRIAYR 299

Query: 61  KKYG 64
           + YG
Sbjct: 300 RGYG 303


>GSVIVT01020575001 assembled CDS
          Length = 249

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 26/27 (96%)

Query: 33  GAGANILRAIAGAGVLAGYDKLQMIVF 59
           GAGANILRA+AGAGVLAGYDKLQ++V 
Sbjct: 213 GAGANILRAVAGAGVLAGYDKLQLLVL 239