Jatropha Genome Database

JcCB1003421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1003421.10 - phase: 0 /pseudo/partial
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035957001 assembled CDS                                       114   9e-27
GSVIVT01007958001 assembled CDS                                       108   5e-25
GSVIVT01003875001 assembled CDS                                       105   4e-24
GSVIVT01022808001 assembled CDS                                       102   3e-23
GSVIVT01000127001 assembled CDS                                        48   7e-07
GSVIVT01038194001 assembled CDS                                        46   3e-06

>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score =  114 bits (285), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 62/69 (89%)

Query: 1    MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
            M+VPRVESKLRVFSFK+QF  QVSDL+ +LNVVNS +EEIRNS KLKRIMQTILSLGNAL
Sbjct: 1303 MKVPRVESKLRVFSFKIQFRIQVSDLKNNLNVVNSASEEIRNSVKLKRIMQTILSLGNAL 1362

Query: 61   NQGTARGKS 69
            N GTARG +
Sbjct: 1363 NHGTARGSA 1371


>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 58/69 (84%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VPRVESKLRVFSFK+QF SQ+SD RKSLN VNS  EE+RNS KLK IM+ IL LGN L
Sbjct: 755 MKVPRVESKLRVFSFKIQFGSQISDFRKSLNTVNSACEEVRNSVKLKEIMKKILYLGNTL 814

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 815 NQGTARGSA 823


>GSVIVT01003875001 assembled CDS
          Length = 947

 Score =  105 bits (262), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/74 (75%), Positives = 61/74 (82%), Gaps = 5/74 (6%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEE-----IRNSAKLKRIMQTILS 55
           MQVPRVE+KLRVFSFK+QF S VS LR SLNVVNS AEE     I+NS KLKRIMQTIL 
Sbjct: 739 MQVPRVETKLRVFSFKIQFPSLVSYLRTSLNVVNSAAEEASYSPIKNSLKLKRIMQTILQ 798

Query: 56  LGNALNQGTARGKS 69
           LGNALNQGT+RG +
Sbjct: 799 LGNALNQGTSRGSA 812


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 58/69 (84%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VPRVESKLRVFSFK+ F SQV DLR +LN +N  A E++ S KL++IMQTIL+LGNAL
Sbjct: 811 MKVPRVESKLRVFSFKITFSSQVKDLRNNLNTINDAAREVKESVKLRQIMQTILTLGNAL 870

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 871 NQGTARGAA 879


>GSVIVT01000127001 assembled CDS
          Length = 852

 Score = 48.1 bits (113), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           + +P    ++    ++  F ++V  LRKS   + + +EE++NS    ++++ +L  GN +
Sbjct: 556 LDIPYAFKRVEAMLYRANFDTEVKYLRKSFQTLEAASEELKNSRLFLKLLEAVLRTGNRM 615

Query: 61  NQGTARGKSNFYQCCLSTMKFLV 83
           N GT RG +  ++  L T+  LV
Sbjct: 616 NVGTNRGDARAFK--LDTLLKLV 636


>GSVIVT01038194001 assembled CDS
          Length = 651

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           + +P    ++    +   F S+V  L++S + + +  EE+RNS    ++++ +L  GN +
Sbjct: 538 LDIPFAFKRVDAMLYIANFDSEVEYLKRSFDTLEAACEELRNSRMFLKLLEAVLKTGNRM 597

Query: 61  NQGTARGKSNFYQCCLSTMKFLV 83
           N GT RG ++ ++  L T+  LV
Sbjct: 598 NVGTNRGDAHAFK--LDTLLKLV 618