Jatropha Genome Database

JcCB0983611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0983611.10 + phase: 0 /partial/short
         (40 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022112001 assembled CDS                                        67   2e-12

>GSVIVT01022112001 assembled CDS
          Length = 524

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 34/40 (85%)

Query: 1   MGIRLDSGDLAYLSGEARKFFRAIEKEFGVPGFGKMSITA 40
           +GIRLDSGDLAYLS EARKFF  IE EFGV  FGKMSITA
Sbjct: 293 VGIRLDSGDLAYLSCEARKFFCTIENEFGVSDFGKMSITA 332