Jatropha Genome Database

JcCB0983031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0983031.10 + phase: 1 /partial
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036547001 assembled CDS                                       210   2e-55

>GSVIVT01036547001 assembled CDS
          Length = 250

 Score =  210 bits (534), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 124/147 (84%)

Query: 5   LFQQRFGSRTDAVLNQLREALRGVGLEFNICELFGNSLESHRLIHFAGQQGLDKQHNLAE 64
            ++ +FG R++ +  ++ E  RG+GL++N+  L GN+L+SHRLI+FAG+QGLDKQHNL E
Sbjct: 103 FYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLDSHRLIYFAGKQGLDKQHNLVE 162

Query: 65  ELFLGYFTKAKYIGDREFLLECAEKVGVEGAAEFLQDPNNGVKEVYEDLHKYSAGLTGVP 124
           EL LGYFT+ KYIGDREFL+E A+KVGVEGAAEFLQDPNNG+ EV E+  KYSA L+GVP
Sbjct: 163 ELCLGYFTQGKYIGDREFLVESAKKVGVEGAAEFLQDPNNGLNEVNEEFKKYSAHLSGVP 222

Query: 125 NYVINGKKKLNGAQPPEVFLRAFEAAA 151
            YVINGK++L+G QPPEVFLRAF+AAA
Sbjct: 223 YYVINGKQQLSGGQPPEVFLRAFQAAA 249